Miyakogusa Predicted Gene

Lj0g3v0222439.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0222439.1 tr|B9SVI9|B9SVI9_RICCO Pectinesterase OS=Ricinus
communis GN=RCOM_0537800 PE=3 SV=1,87.27,0,no description,Pectin lyase
fold; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
Pectinesterase,Pe,CUFF.14443.1
         (561 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC65801 homologue to UniRef100_A2Q3R5 Cluster: Pectines...   450   e-126

>gnl|LJGI|TC65801 homologue to UniRef100_A2Q3R5 Cluster: Pectinesterase; n=1; Medicago
            truncatula|Rep: Pectinesterase - Medicago truncatula
            (Barrel medic), complete
          Length = 1287

 Score =  450 bits (227), Expect = e-126
 Identities = 413/475 (86%)
 Strand = Plus / Plus

                                                                        
Query: 54   gcaggacacactgtatttgcattatggcaaacaatatctgaaagattgttatattgaagg 113
            ||||||||||||||| || ||||| |||||||||||| |||||||||| |||||||||||
Sbjct: 534  gcaggacacactgtacttacattacggcaaacaatatttgaaagattgctatattgaagg 593

                                                                        
Query: 114  aagtgtggacttcatttttggtaatagcactgcactcttggagcattgtcatatccactg 173
            ||||||||| ||||| ||||| ||||| ||||| || |||||||||||||||||||||||
Sbjct: 594  aagtgtggatttcatctttggcaatagtactgctcttttggagcattgtcatatccactg 653

                                                                        
Query: 174  caagtctgcagggttcataactgcacagagcagaaaatctccacaggaaacaaccggtta 233
            |||||||||||||||||| || |||||||| ||||||||  ||||||||||||| |||||
Sbjct: 654  caagtctgcagggttcattaccgcacagagtagaaaatcatcacaggaaacaactggtta 713

                                                                        
Query: 234  tgtatttctgagatgtgttatcacaggtaacggaggaacttcatattcatatcttggacg 293
            ||||||  |||||||||||||||||||||| ||||||  ||||||  ||||||| |||||
Sbjct: 714  tgtattcttgagatgtgttatcacaggtaatggaggacattcatacgcatatctcggacg 773

                                                                        
Query: 294  accatggggaccttttggaagagttgtctttgcatttacttacatggatcaatgtataaa 353
            ||| ||||||||||| ||||| || ||||||||||  ||||||||||||| |||| ||| 
Sbjct: 774  accgtggggacctttcggaagggtggtctttgcatacacttacatggatccatgtgtaag 833

                                                                        
Query: 354  gcatgttggttggaataattggggaaaatttgagaatgaaagaagtgcttgcttctatgt 413
            ||||||||| ||| |||||||||| ||| |||||||||| |||||||||||||| |||| 
Sbjct: 834  gcatgttggctgggataattgggggaaagttgagaatgagagaagtgcttgcttttatga 893

                                                                        
Query: 414  atacaggtgctttggaccgggttgctgtccatccaaacgagtaaagtgggctagacaatt 473
            ||||||||| |||||||| ||||| | ||||||||| ||||| || |||  |||| ||||
Sbjct: 894  atacaggtgttttggacctggttgttctccatccaaccgagtgaattggtgtagagaatt 953

                                                                   
Query: 474  aatggataaagaagcagaacagtttctcatgcatggcttcattgaccctgaacca 528
             |||||| ||||||| || |||||  ||||||||   |||||||| || ||||||
Sbjct: 954  gatggatgaagaagcggagcagttcatcatgcatcctttcattgatccagaacca 1008