Miyakogusa Predicted Gene
- Lj0g3v0221429.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0221429.1 tr|K1ZDN5|K1ZDN5_9BACT RNA binding S1 protein
OS=uncultured bacterium PE=4 SV=1,32.52,2e-18,Ribosomal protein
S1-like RNA-binding domain,RNA-binding domain, S1; seg,NULL; S1
RNA-BINDING DOMAIN,CUFF.14365.1
(1203 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC76137 similar to UniRef100_A7Q9K4 Cluster: Chromosome... 1259 0.0
gnl|LJGI|TC73213 similar to UniRef100_A7Q9K4 Cluster: Chromosome... 920 0.0
gnl|LJGI|BP056936 homologue to UniRef100_A7Q9K4 Cluster: Chromos... 151 1e-35
>gnl|LJGI|TC76137 similar to UniRef100_A7Q9K4 Cluster: Chromosome chr5 scaffold_67,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_67, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (38%)
Length = 831
Score = 1259 bits (635), Expect = 0.0
Identities = 638/639 (99%)
Strand = Plus / Plus
Query: 113 tgttcagttttcgaaaatgtccccacaagttcactgtaaaaactccatggctatggcagc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tgttcagttttcgaaaatgtccccacaagttcactgtaaaaactccatggctatggcagc 252
Query: 173 atcctcatcatcaccaccacctccacaccgctaaaacctccgtctctggcaatacccaga 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atcctcatcatcaccaccacctccacaccgctaaaacctccgtctctggcaatacccaga 312
Query: 233 ttgatcaaaacccggaaactggaattcttcgacgcccttctgtttcagacccactgcagg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttgatcaaaacccggaaactggaattcttcgacgcccttctgtttcagacccactgcagg 372
Query: 293 atgaccctcgtcaagctcggaaattgtcggattggaaggcggcaaaggcatataaagaaa 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 atgaccctcgtcaagctcggaaattgtcggattggaaggcggcaaaggcatataaagaaa 432
Query: 353 gtggacttgtttatagtggcagggttgaaggttttaatggtggaggcctgctggttcgct 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gtggacttgtttatagtggcagggttgaaggttttaatggtggaggcctgctggttcgct 492
Query: 413 tttattctatattggggtttctcccatacccacaattgagcccaatgcactcatgtaaag 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tttattctatattggggtttctcccatacccacaattgagcccaatgcactcatgtaaag 552
Query: 473 aaccagaaaaaactatccaagaaatagcaaaaggcttagttggttcagtcatgccagtga 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aaccagaaaaaactatccaagaaatagcaaaaggcttagttggttcagtcatgccagtga 612
Query: 533 aggtaattctagcagatgacgataagacaaaattgatcttctctgaaaaggaagctgcct 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aggtaattctagcagatgacgataagacaaaattgatcttctctgaaaaggaagctgcct 672
Query: 593 actcaaaattttcaaaacaggtcaaggtcggggacatttttgaagcaaaagttggttctg 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 actcaaaattttcaaaacaggtcaaggtcggggacatttttgaagcaaaagttggttctg 732
Query: 653 ttgaggactatggtgcttttgttcatttgcgcttccccgacggtctttatcacctaactg 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ttgaggactatggtgcttttgttcatttgcgcttccccgacggtctttatcacctaactg 792
Query: 713 gactaatacacatctcagaagtgtcatgggatctagttc 751
|||||||||||||||||||||||||||||||||| ||||
Sbjct: 793 gactaatacacatctcagaagtgtcatgggatctggttc 831
Score = 151 bits (76), Expect = 1e-35
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 atgtccatcttctgtgctacactcggctcctttacttccatctccttcgtctcaccttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 atgtccatcttctgtgctacactcggctcctttacttccatctccttcgtctcaccttca 140
Query: 61 caatcccaatccgacc 76
||||||||||||||||
Sbjct: 141 caatcccaatccgacc 156
>gnl|LJGI|TC73213 similar to UniRef100_A7Q9K4 Cluster: Chromosome chr5 scaffold_67,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_67, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (41%)
Length = 648
Score = 920 bits (464), Expect = 0.0
Identities = 473/476 (99%)
Strand = Plus / Plus
Query: 728 cagaagtgtcatgggatctagttcaagatgtaagagacttcttaacagatggtgatgaag 787
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagaagtgtcatgggatctggttcaagatgtaagagacttcttaacagatggtgatgaag 60
Query: 788 tgagggtcaaagttatcaatattgatagtggaaagtctaggattactctgtcaatgaaac 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgagggtcaaagttatcaatattgatagtggaaagtctaggattactctgtcaatgaaac 120
Query: 848 agctagaagaagatccacttctagaaactctggacaaagtaatacctcaggatggtatag 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agctagaagaagatccacttctagaaactctggacaaagtaatacctcaggatggtatag 180
Query: 908 ctgactctgattctatgagtgatagtggtagcagtggcattgagcccctgccagggcttg 967
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 181 ctgactctgattctatgagtgatagtggtagcagtggcattgagccccttccagggcttg 240
Query: 968 aatcaatccttgaagagcgtttacaggaagatggtatatatgatgcaagaatcagccgtc 1027
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatcaatccttgaagagcttttacaggaagatggtatatatgatgcaagaatcagccgtc 300
Query: 1028 aagggtttgaaaaacgagtggtctcgcaagacttgcaactttggctttctaatgcacctc 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagggtttgaaaaacgagtggtctcgcaagacttgcaactttggctttctaatgcacctc 360
Query: 1088 ctacgaatcaaaggtttaccctccttgctcgggctggtagacaggtgcaggagatacatc 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctacgaatcaaaggtttaccctccttgctcgggctggtagacaggtgcaggagatacatc 420
Query: 1148 taactacatcccttgatcaagaaggtatcaaaaaggcattacaacgagtattggag 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taactacatcccttgatcaagaaggtatcaaaaaggcattacaacgagtattggag 476
>gnl|LJGI|BP056936 homologue to UniRef100_A7Q9K4 Cluster: Chromosome chr5 scaffold_67,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_67, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (7%)
Length = 490
Score = 151 bits (76), Expect = 1e-35
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 1128 acaggtgcaggagatacatctaactacatcccttgatcaagaaggtatcaaaaaggcatt 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 acaggtgcaggagatacatctaactacatcccttgatcaagaaggtatcaaaaaggcatt 189
Query: 1188 acaacgagtattggag 1203
||||||||||||||||
Sbjct: 188 acaacgagtattggag 173