Miyakogusa Predicted Gene
- Lj0g3v0219909.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0219909.1 tr|Q2HS37|Q2HS37_MEDTR Nucleic acid binding NABP
OS=Medicago truncatula GN=MTR_2g097670 PE=4 SV=1,77.63,0,PUM,Pumilio
RNA-binding repeat; PUM_HD,Pumilio RNA-binding repeat; NABP,Nucleic
acid binding NABP; P,CUFF.15248.1
(2424 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC62005 homologue to UniRef100_Q2HS37 Cluster: Nucleic ... 1402 0.0
gnl|LJGI|TC76226 similar to UniRef100_Q2HS37 Cluster: Nucleic ac... 918 0.0
gnl|LJGI|AV409964 similar to UniRef100_A7PIR4 Cluster: Chromosom... 123 5e-27
gnl|LJGI|TC78814 88 3e-16
>gnl|LJGI|TC62005 homologue to UniRef100_Q2HS37 Cluster: Nucleic acid binding NABP;
n=1; Medicago truncatula|Rep: Nucleic acid binding NABP -
Medicago truncatula (Barrel medic), partial (32%)
Length = 1412
Score = 1402 bits (707), Expect = 0.0
Identities = 716/719 (99%)
Strand = Plus / Plus
Query: 1441 tctggccatgttgttgaattcagtgctgatcaatatgggagccggtttatccaacaaaag 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctggccatgttgttgaattcagtgctgatcaatatgggagccggtttatccaacaaaag 60
Query: 1501 ctggaaacagcaactactgaagaaaagaccatggtttatcaggaaattatgcctcatgct 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctggaaacagcaactactgaagaaaagaccatggtttatcaggaaattatgcctcatgct 120
Query: 1561 cttgcattgatgactgatgtctttggtaattatgtggttcagaagttttttgagcatgga 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cttgcattgatgactgatgtctttggtaattatgtggttcagaagttttttgagcatgga 180
Query: 1621 cttgcatcccagagaagagagttagccaacaagctatttagccatgttctgacacttagc 1680
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 181 cttgcatcccagagaagagagttagccaacaagctttttagccatgttctggcacttagc 240
Query: 1681 cttcaaatgtatggttgtcgggtcatccagaaggccatagaagttgttgatctagaccag 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cttcaaatgtatggttgtcgggtcatccagaaggccatagaagttgttgatctagaccag 300
Query: 1741 aagataaatatggttcaggagcttgatggtaatatcatgcgctgtgtacgagatcagaat 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagataaatatggttcaggagcttgatggtaatatcatgcgctgtgtacgagatcagaat 360
Query: 1801 ggtaaccatgttattcagaagtgtattgaatgtgtacctgaagatgcaatcgactttatt 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggtaaccatgttattcagaagtgtattgaatgtgtacctgaagatgcaatcgactttatt 420
Query: 1861 gtctcaaccttttttgatcaagttgtgacactatcaacccatccatatggttgtcgggtg 1920
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 421 gtctcaaccttttttgatcaagttgtgacactatcaacccatccatatggatgtcgggtg 480
Query: 1921 atacagagagtcctggagcactgcaaagatcctaacacacagcaaaaagttatggatgag 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atacagagagtcctggagcactgcaaagatcctaacacacagcaaaaagttatggatgag 540
Query: 1981 attttaggggcagttagcatgttagcccaggatcagtacggaaactatgttgtccagcat 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 attttaggggcagttagcatgttagcccaggatcagtacggaaactatgttgtccagcat 600
Query: 2041 gtacttgagcatgggaaacctcatgagcgttcagctattatcaaggaattagctggcaat 2100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gtacttgagcatgggaaacctcatgagcgttcagctattatcaaggaattagctggcaat 660
Query: 2101 attgttcaaatgagccaacagaagtttgcctcaaatgttgtggagaagtgtttggcctt 2159
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 attgttcaaatgagccaacagaagtttgcctcaaatgttgtggagaagtgtttggcctt 719
Score = 521 bits (263), Expect = e-147
Identities = 266/267 (99%)
Strand = Plus / Plus
Query: 2158 ttccttgtgaatgagatgctcggatccacggatgaaaatgagcctcttcaggccatgatg 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ttccttgtgaatgagatgctcggatccacggatgaaaatgagcctcttcaggccatgatg 801
Query: 2218 aaagatcaatttgctaattatgttgtgcaaaaggtgctggagacttgtgatgaccatcag 2277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 aaagatcaatttgctaattatgttgtgcaaaaggtgctggagacttgtgatgaccatcag 861
Query: 2278 cgtgagctaattctttcacgaattaaagtccatttgaatgcattgaaaaaatacacctac 2337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 cgtgagctaattctttcacgaattaaagtccatttgaatgcattgaaaaaatacacctac 921
Query: 2338 ggaaagcatattgtcgcacgtgtagagaaacttgttgctgctggagagaggagaattgct 2397
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 922 ggaaagcatattgtcgcacgtgtagagaaacttgttgctgctggagagaggagaagtgct 981
Query: 2398 gctcagtctcctcatcctactgcttag 2424
|||||||||||||||||||||||||||
Sbjct: 982 gctcagtctcctcatcctactgcttag 1008
>gnl|LJGI|TC76226 similar to UniRef100_Q2HS37 Cluster: Nucleic acid binding NABP;
n=1; Medicago truncatula|Rep: Nucleic acid binding NABP
- Medicago truncatula (Barrel medic), partial (24%)
Length = 894
Score = 918 bits (463), Expect = 0.0
Identities = 486/494 (98%)
Strand = Plus / Plus
Query: 1 atgagaggttctgcttctgcagagtggggtggtgatgggctcattggcttgccaggccta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atgagaggttctgcttctgcagagtggggtggtgatgggctcattggcttgccaggccta 460
Query: 61 ggtcttgggagtaaacaaaagagccttgcagaaattttccaggatgacatgggacataag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ggtcttgggagtaaacaaaagagccttgcagaaattttccaggatgacatgggacataag 520
Query: 121 accactattgctggatttcattctcgtccagccagccgcaatgcatttgatgaaaatgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 accactattgctggatttcattctcgtccagccagccgcaatgcatttgatgaaaatgtt 580
Query: 181 gatattatgacttctgctgaagcagacctcgccgatttatgccgtgattcctcagccact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gatattatgacttctgctgaagcagacctcgccgatttatgccgtgattcctcagccact 640
Query: 241 gatgccttaagatctggaacaaatcttcaggggtcgtctgcaacccaaaataatggcacg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gatgccttaagatctggaacaaatcttcaggggtcgtctgcaacccaaaataatggcacg 700
Query: 301 caaagttcatatacttatgctgctgcacttggctctcccttgtcacgtagtactactcct 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 701 caaagttcatatacttatgctgctgcacttggctctcccttgtcacgaagtaccactcct 760
Query: 361 gatccacagcatgttgctagagctcccagtccttgcctcacacctattggtggcgggaga 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 761 gatccacagcatgttgctagagcccccagtccttgcctcacacctattggtggcgggaga 820
Query: 421 gttgctgctgctgagaagagaggcatggccaatcctgatgcatataatgtttcaactggc 480
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||| | ||
Sbjct: 821 gttgttgctgctgagaagagaggcatgggcaatcctgatgcatataatgtttcatccggn 880
Query: 481 ctcaatgggtcagc 494
||||||||||||||
Sbjct: 881 ctcaatgggtcagc 894
>gnl|LJGI|AV409964 similar to UniRef100_A7PIR4 Cluster: Chromosome chr13 scaffold_17,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_17, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (25%)
Length = 434
Score = 123 bits (62), Expect = 5e-27
Identities = 173/210 (82%)
Strand = Plus / Plus
Query: 1396 gagtttaaaagcaacaaaacaaaatgtttcgagctttctgaaatttctggccatgttgtt 1455
||||| |||||||||||||| ||||| || || ||| | |||||| ||||||||||||||
Sbjct: 225 gagttcaaaagcaacaaaaccaaatgctttgaacttgcagaaattgctggccatgttgtt 284
Query: 1456 gaattcagtgctgatcaatatgggagccggtttatccaacaaaagctggaaacagcaact 1515
|| |||||| |||| || ||||| ||||| ||||||||||| || || || ||||| ||
Sbjct: 285 gacttcagttctgaccagtatggaagccgttttatccaacagaaacttgagacagccaca 344
Query: 1516 actgaagaaaagaccatggtttatcaggaaattatgcctcatgctcttgcattgatgact 1575
| || || || | ||||||| || ||||| ||||| || |||||| | ||||||||
Sbjct: 345 atggacgagaaaaatatggttttccatgaaatcatgccacaggctctttctctgatgact 404
Query: 1576 gatgtctttggtaattatgtggttcagaag 1605
||||||||||||||||||||| ||||||||
Sbjct: 405 gatgtctttggtaattatgtgattcagaag 434
>gnl|LJGI|TC78814
Length = 523
Score = 87.7 bits (44), Expect = 3e-16
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 2377 gctggagagaggagaattgctgctcagtctcctcatcctactgcttag 2424
|||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 gctggagagaggagaagtgctgctcagtctcctcatcctactgcttag 48