Miyakogusa Predicted Gene
- Lj0g3v0218689.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0218689.1 tr|G7K0D4|G7K0D4_MEDTR RRNA intron-encoded homing
endonuclease OS=Medicago truncatula GN=MTR_5g05102,84.21,0.00000001,
,CUFF.14139.1
(138 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC78019 gb|AF071069.1|AF071069 Trifolium repens 18S rib... 194 9e-50
gnl|LJGI|TC72618 homologue to gb|AF071069.1|AF071069 Trifolium r... 194 9e-50
gnl|LJGI|TC82490 homologue to gb|AF071069.1|AF071069 Trifolium r... 186 2e-47
gnl|LJGI|TC73258 similar to UniRef100_A3KD20 Cluster: Leucine-ri... 186 2e-47
gnl|LJGI|TC79931 homologue to gb|AF071069.1|AF071069 Trifolium r... 165 8e-41
gnl|LJGI|TC65250 similar to UniRef100_A7QGT1 Cluster: Peptidyl-p... 143 3e-34
gnl|LJGI|GO028356 homologue to UniRef100_P13993 Cluster: Repetit... 78 1e-14
gnl|LJGI|AI967693 similar to UniRef100_A8IXU6 Cluster: Cold regu... 78 1e-14
gnl|LJGI|TC72400 gb|U59935.1|U59935 Pholisma arenarium 18S ribos... 78 1e-14
gnl|LJGI|BW600593 similar to UniRef100_A7PLF2 Cluster: Chromosom... 54 2e-07
>gnl|LJGI|TC78019 gb|AF071069.1|AF071069 Trifolium repens 18S ribosomal RNA gene,
partial sequence, partial (83%)
Length = 1935
Score = 194 bits (98), Expect = 9e-50
Identities = 127/136 (93%), Gaps = 3/136 (2%)
Strand = Plus / Plus
Query: 3 gcatttattagataaaaggtcgacacaggctttgcctgttgctttgatgatgattcatga 62
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 657 gcatttattagataaaaggtcgacgcaggctttgcctgttgctttgat---gattcatga 713
Query: 63 taactcgtcggattgcacgacctttgtgccgatgacgcatcattcaaatttctgcccaat 122
||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct: 714 taactcgtcggatcgcacggcctttgtgccggcgacgcatcattcaaatttctgccctat 773
Query: 123 caactttcgatggtag 138
||||||||||||||||
Sbjct: 774 caactttcgatggtag 789
>gnl|LJGI|TC72618 homologue to gb|AF071069.1|AF071069 Trifolium repens 18S ribosomal
RNA gene, partial sequence, partial (31%)
Length = 610
Score = 194 bits (98), Expect = 9e-50
Identities = 127/136 (93%), Gaps = 3/136 (2%)
Strand = Plus / Plus
Query: 3 gcatttattagataaaaggtcgacacaggctttgcctgttgctttgatgatgattcatga 62
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 213 gcatttattagataaaaggtcgacgcaggctttgcctgttgctttgat---gattcatga 269
Query: 63 taactcgtcggattgcacgacctttgtgccgatgacgcatcattcaaatttctgcccaat 122
||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct: 270 taactcgtcggatcgcacggcctttgtgccggcgacgcatcattcaaatttctgccctat 329
Query: 123 caactttcgatggtag 138
||||||||||||||||
Sbjct: 330 caactttcgatggtag 345
>gnl|LJGI|TC82490 homologue to gb|AF071069.1|AF071069 Trifolium repens 18S ribosomal
RNA gene, partial sequence, partial (22%)
Length = 430
Score = 186 bits (94), Expect = 2e-47
Identities = 126/136 (92%), Gaps = 3/136 (2%)
Strand = Plus / Plus
Query: 3 gcatttattagataaaaggtcgacacaggctttgcctgttgctttgatgatgattcatga 62
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 164 gcatttattagataaaaggtcgacgcaggctttgcctgttgctttgat---gattcatga 220
Query: 63 taactcgtcggattgcacgacctttgtgccgatgacgcatcattcaaatttctgcccaat 122
||||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||| ||
Sbjct: 221 taactcgtcggatcgcacggcctctgtgccggcgacgcatcattcaaatttctgccctat 280
Query: 123 caactttcgatggtag 138
||||||||||||||||
Sbjct: 281 caactttcgatggtag 296
>gnl|LJGI|TC73258 similar to UniRef100_A3KD20 Cluster: Leucine-rich repeat/extensin;
n=1; Nicotiana plumbaginifolia|Rep: Leucine-rich
repeat/extensin - Nicotiana plumbaginifolia
(Leadwort-leaved tobacco), partial (4%)
Length = 488
Score = 186 bits (94), Expect = 2e-47
Identities = 126/136 (92%), Gaps = 3/136 (2%)
Strand = Plus / Plus
Query: 3 gcatttattagataaaaggtcgacacaggctttgcctgttgctttgatgatgattcatga 62
|||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 24 gcatttattaaataaaaggtcgacgcaggctttgcctgttgctttgat---gattcatga 80
Query: 63 taactcgtcggattgcacgacctttgtgccgatgacgcatcattcaaatttctgcccaat 122
||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct: 81 taactcgtcggatcgcacggcctttgtgccggcgacgcatcattcaaatttctgccctat 140
Query: 123 caactttcgatggtag 138
||||||||||||||||
Sbjct: 141 caactttcgatggtag 156
>gnl|LJGI|TC79931 homologue to gb|AF071069.1|AF071069 Trifolium repens 18S ribosomal
RNA gene, partial sequence, partial (17%)
Length = 485
Score = 165 bits (83), Expect = 8e-41
Identities = 109/117 (93%), Gaps = 3/117 (2%)
Strand = Plus / Plus
Query: 3 gcatttattagataaaaggtcgacacaggctttgcctgttgctttgatgatgattcatga 62
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 190 gcatttattagataaaaggtcgacgcaggctttgcctgttgctttgat---gattcatga 246
Query: 63 taactcgtcggattgcacgacctttgtgccgatgacgcatcattcaaatttctgccc 119
||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 247 taactcgtcggatcgcacggcctttgtgccggcgacgcatcattcaaatttctgccc 303
>gnl|LJGI|TC65250 similar to UniRef100_A7QGT1 Cluster: Peptidyl-prolyl cis-trans
isomerase; n=1; Vitis vinifera|Rep: Peptidyl-prolyl
cis-trans isomerase - Vitis vinifera (Grape), partial
(54%)
Length = 666
Score = 143 bits (72), Expect = 3e-34
Identities = 98/106 (92%), Gaps = 3/106 (2%)
Strand = Plus / Plus
Query: 6 tttattagataaaaggtcgacacaggctttgcctgttgctttgatgatgattcatgataa 65
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 117 tttattagataaaaggtcgacgcaggctttgcctgttgctttgat---gattcatgataa 173
Query: 66 ctcgtcggattgcacgacctttgtgccgatgacgcatcattcaaat 111
|||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 174 ctcgtcggatcgcacggcctttgtgccggcgacgcatcattcaaat 219
>gnl|LJGI|GO028356 homologue to UniRef100_P13993 Cluster: Repetitive proline-rich cell
wall protein 2 precursor; n=1; Glycine max|Rep:
Repetitive proline-rich cell wall protein 2 precursor -
Glycine max (Soybean), partial (47%)
Length = 624
Score = 77.8 bits (39), Expect = 1e-14
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 96 gacgcatcattcaaatttctgcccaatcaactttcgatggtag 138
|||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 619 gacgcatcattcaaatttctgccctatcaactttcgatggtag 577
>gnl|LJGI|AI967693 similar to UniRef100_A8IXU6 Cluster: Cold regulated 413 plasma
membrane 1; n=1; Brassica rapa|Rep: Cold regulated 413
plasma membrane 1 - Brassica campestris (Field mustard),
partial (51%)
Length = 450
Score = 77.8 bits (39), Expect = 1e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 96 gacgcatcattcaaatttctgcccaatcaactttcgatggtag 138
|||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 4 gacgcatcattcaaatttctgccctatcaactttcgatggtag 46
>gnl|LJGI|TC72400 gb|U59935.1|U59935 Pholisma arenarium 18S ribosomal RNA gene,
partial sequence, partial (11%)
Length = 503
Score = 77.8 bits (39), Expect = 1e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 96 gacgcatcattcaaatttctgcccaatcaactttcgatggtag 138
|||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 10 gacgcatcattcaaatttctgccctatcaactttcgatggtag 52
>gnl|LJGI|BW600593 similar to UniRef100_A7PLF2 Cluster: Chromosome chr7 scaffold_20,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_20, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 437
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 gcatttattagataaaaggtcgacacaggct 33
|||||||||||||||||||||||| ||||||
Sbjct: 35 gcatttattagataaaaggtcgacgcaggct 65