Miyakogusa Predicted Gene
- Lj0g3v0216549.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0216549.1 tr|B9MV63|B9MV63_POPTR Chromatin remodeling
complex subunit (Fragment) OS=Populus trichocarpa
GN=CHR,40.74,1e-18,Helicase_C,Helicase, C-terminal; P-loop containing
nucleoside triphosphate hydrolases,NULL; HELICASE,CUFF.13975.1
(396 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC78397 similar to UniRef100_A7P7U3 Cluster: Chromosome... 498 e-140
gnl|LJGI|TC81005 similar to UniRef100_A7NXX0 Cluster: Chromosome... 385 e-106
gnl|LJGI|TC71927 similar to UniRef100_A7NXX0 Cluster: Chromosome... 351 2e-96
gnl|LJGI|TC78700 similar to UniRef100_A7P7U3 Cluster: Chromosome... 283 4e-76
>gnl|LJGI|TC78397 similar to UniRef100_A7P7U3 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (32%)
Length = 925
Score = 498 bits (251), Expect = e-140
Identities = 350/383 (91%)
Strand = Plus / Plus
Query: 13 aacaattcacctgatgccaaagtcttctttggctcaatcaaggcatgtggagagggcata 72
||||||||||| ||||| ||| | |||||||| ||||||||||| ||||||||||| |||
Sbjct: 216 aacaattcaccggatgctaaaattttctttggttcaatcaaggcttgtggagagggtata 275
Query: 73 tccttggttggggcatcccgagtacttattttggatgttcatctgaacccgtctgttact 132
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 276 tctttggttggggcatcccgagtacttattttggatgttcatctgaacccgtcagttact 335
Query: 133 cgccaagctattggtcgtgcattccgaccagggcagacaaagaaagtctttgtgtatcgg 192
|| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 336 cgtcaagctattggtcgtgcatttcgaccaggacagacaaagaaggtctttgtgtatcga 395
Query: 193 ttgatagcagctgattctcctgaagaggaagatcacattacttctttcaagaaggaactg 252
|||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||||| ||
Sbjct: 396 ttgatagctgctgattctccggaagaggatgatcacattacttgtttcaagaaggaattg 455
Query: 253 atttcaaagatgtggtttgagtggaatgagtattgtggtgatagagccttccaagttgag 312
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 456 atttcaaagatgtggtttgagtggaatgagtactgtggtgatagggccttccaagttgag 515
Query: 313 actactagtgccaaagaatgtggtgatttgttccttgcgagtccaatgttaggagaagac 372
|| ||||| ||| |||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 516 accgttagtgtcaatgaatgtggtgatgagttccttgagactccaatgttaggagaagat 575
Query: 373 ataaaagctctgtataaaaggta 395
|||||||| |||||||||||||
Sbjct: 576 gtaaaagctttgtataaaaggta 598
>gnl|LJGI|TC81005 similar to UniRef100_A7NXX0 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (19%)
Length = 715
Score = 385 bits (194), Expect = e-106
Identities = 311/350 (88%)
Strand = Plus / Plus
Query: 47 caatcaaggcatgtggagagggcatatccttggttggggcatcccgagtacttattttgg 106
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 caatcaaggcttgtggagagggcatatccttggttggggcatcccgagtacttgttttgg 60
Query: 107 atgttcatctgaacccgtctgttactcgccaagctattggtcgtgcattccgaccagggc 166
|||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||
Sbjct: 61 atgttcatctgaacccatcagttactcgtcaagctattggccgtgcattccgaccagggc 120
Query: 167 agacaaagaaagtctttgtgtatcggttgatagcagctgattctcctgaagaggaagatc 226
|||||||||| |||||||||||||| |||||||| |||||||||| |||||||| ||||
Sbjct: 121 agacaaagaaggtctttgtgtatcgattgatagctgctgattctcacgaagaggatgatc 180
Query: 227 acattacttctttcaagaaggaactgatttcaaagatgtggtttgagtggaatgagtatt 286
|| | |||| ||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 181 acctgacttgtttcaagaaggaatcaatttctaagatgtggtttgaatggaatgagtatt 240
Query: 287 gtggtgatagagccttccaagttgagactactagtgccaaagaatgtggtgatttgttcc 346
|||||||| ||| ||| | ||||||| |||| ||||||||||||||| ||||||
Sbjct: 241 gtggtgatcaagctttcaaggttgagaacgtcagtgtgaaagaatgtggtgatctgttcc 300
Query: 347 ttgcgagtccaatgttaggagaagacataaaagctctgtataaaaggtag 396
||| |||| | ||||||||||||||| || ||||||| ||||||||||||
Sbjct: 301 ttgagagttcgatgttaggagaagacgtacaagctctatataaaaggtag 350
>gnl|LJGI|TC71927 similar to UniRef100_A7NXX0 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (15%)
Length = 588
Score = 351 bits (177), Expect = 2e-96
Identities = 258/285 (90%)
Strand = Plus / Plus
Query: 112 catctgaacccgtctgttactcgccaagctattggtcgtgcattccgaccagggcagaca 171
|||||||| || || |||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct: 1 catctgaatccatcagttactcgtcaagctattggccgtgcattccgaccaggacagaca 60
Query: 172 aagaaagtctttgtgtatcggttgatagcagctgattctcctgaagaggaagatcacatt 231
||||| |||||||||||||| |||||||| ||||| ||||| |||||||| |||||||||
Sbjct: 61 aagaaggtctttgtgtatcgattgatagctgctgactctccagaagaggacgatcacatt 120
Query: 232 acttctttcaagaaggaactgatttcaaagatgtggtttgagtggaatgagtattgtggt 291
|||| ||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 121 acttgtttcaagaaggaattgatttcaaagatgtggtttgaatggaatgagtactgtggt 180
Query: 292 gatagagccttccaagttgagactactagtgccaaagaatgtggtgatttgttccttgcg 351
|||||||||||||||||||||||| ||||| ||| |||||||||||| |||||||| |
Sbjct: 181 gatagagccttccaagttgagactgttagtgtcaatgaatgtggtgatgagttccttgag 240
Query: 352 agtccaatgttaggagaagacataaaagctctgtataaaaggtag 396
| |||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 241 actccaatgttaggagaagatgtaaaagctttgtataaaaggtag 285
>gnl|LJGI|TC78700 similar to UniRef100_A7P7U3 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (13%)
Length = 533
Score = 283 bits (143), Expect = 4e-76
Identities = 200/219 (91%)
Strand = Plus / Plus
Query: 178 gtctttgtgtatcggttgatagcagctgattctcctgaagaggaagatcacattacttct 237
|||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||| |
Sbjct: 1 gtctttgtgtatcgattgatagctgctgattctccggaagaggacgatcacattacttgt 60
Query: 238 ttcaagaaggaactgatttcaaagatgtggtttgagtggaatgagtattgtggtgataga 297
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 61 ttcaagaaggaattgatttcaaagatgtggtttgagtggaatgagtactgtggtgataga 120
Query: 298 gccttccaagttgagactactagtgccaaagaatgtggtgatttgttccttgcgagtcca 357
||||||||||| |||||| ||||| ||| |||||||||||| |||||||| || ||||
Sbjct: 121 gccttccaagtagagactgttagtgtcaatgaatgtggtgatgagttccttgagactcca 180
Query: 358 atgttaggagaagacataaaagctctgtataaaaggtag 396
|||||||||||||| |||||||| ||||||||||||||
Sbjct: 181 atgttaggagaagatgtaaaagctttgtataaaaggtag 219