Miyakogusa Predicted Gene
- Lj0g3v0215559.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0215559.1 Non Chatacterized Hit- tr|A5AVY9|A5AVY9_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,36.21,7e-19,UBN2_3,NULL; seg,NULL,CUFF.13896.1
(780 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57940 weakly similar to UniRef100_O23588 Cluster: Ret... 781 0.0
gnl|LJGI|BP058111 404 e-112
gnl|LJGI|TC73189 373 e-102
>gnl|LJGI|TC57940 weakly similar to UniRef100_O23588 Cluster: Retrotransposon like
protein; n=1; Arabidopsis thaliana|Rep: Retrotransposon
like protein - Arabidopsis thaliana (Mouse-ear cress),
partial (4%)
Length = 1348
Score = 781 bits (394), Expect = 0.0
Identities = 434/446 (97%), Gaps = 1/446 (0%)
Strand = Plus / Plus
Query: 1 atgtggcgttctttgaagaccaagaacaaacatgggtttgttgatggttcccttccgaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 atgtggcgttctttgaagaccaagaacaaacatgggtttgttgatggttcccttccgaa- 756
Query: 61 cctgcagctgatgatcctttatttggtgtatgggatcgctgcaacactttggtgatttct 120
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct: 757 cctgcagctgatgatcctttatttggcgtatgggatcgctgcaatactttggtgatttat 816
Query: 121 tggcttacacaagcaatggatccggttatagctcaaaacattttgtggatggatcttgct 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 817 tggcttacacaagcaatggatccggttatagctcaaagcattttgtggatggatcttgct 876
Query: 181 tctgagatctgggcagatttgaagtccagatattatcaaggtgatttgttcagaatttca 240
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 877 tctgagatttgggcagatttgaagtccagatattatcaaggcgatttgttcagaatttca 936
Query: 241 gatcttcaagaagagttgtattctcttaaacaaggtgacatgcctatcactacttacttt 300
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 gatcttcaaaaagatttgtattctcttaaacaaggtgacatgcctatcactacttacttt 996
Query: 301 actagattgaagagtttatggcaagaattagaagcttttaggccaattccttcttgtacc 360
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 997 actcgattgaagagtttatggcaagaatatgaagcttttaggccaattccttcttgtacc 1056
Query: 361 tgtgctgtttcttgtacttgtgatttgattccaattgttaaaagctatagagacagtgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 tgtgctgtttcttgtacttgtgatttgattccaattgttaaaagctatagagacagtgat 1116
Query: 421 tatgtgataagatttctcaagggttt 446
||||||||||||||||||||||||||
Sbjct: 1117 tatgtgataagatttctcaagggttt 1142
>gnl|LJGI|BP058111
Length = 570
Score = 404 bits (204), Expect = e-112
Identities = 204/204 (100%)
Strand = Plus / Minus
Query: 577 agaagaatgggagttttaattttgttactcaagaagatggtgatgattttgatgccaaat 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 agaagaatgggagttttaattttgttactcaagaagatggtgatgattttgatgccaaat 511
Query: 637 cggcttgttcttttaagcctgaagtcaatcattcaacaccggggtttactgctgagcaat 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 cggcttgttcttttaagcctgaagtcaatcattcaacaccggggtttactgctgagcaat 451
Query: 697 agaagactctattggctttattgtctccgttttctaccagttctggtcaggcttcatcaa 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 agaagactctattggctttattgtctccgttttctaccagttctggtcaggcttcatcaa 391
Query: 757 gtaatcagattgctactgttgtag 780
||||||||||||||||||||||||
Sbjct: 390 gtaatcagattgctactgttgtag 367
>gnl|LJGI|TC73189
Length = 828
Score = 373 bits (188), Expect = e-102
Identities = 188/188 (100%)
Strand = Plus / Plus
Query: 593 taattttgttactcaagaagatggtgatgattttgatgccaaatcggcttgttcttttaa 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taattttgttactcaagaagatggtgatgattttgatgccaaatcggcttgttcttttaa 60
Query: 653 gcctgaagtcaatcattcaacaccggggtttactgctgagcaatagaagactctattggc 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcctgaagtcaatcattcaacaccggggtttactgctgagcaatagaagactctattggc 120
Query: 713 tttattgtctccgttttctaccagttctggtcaggcttcatcaagtaatcagattgctac 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttattgtctccgttttctaccagttctggtcaggcttcatcaagtaatcagattgctac 180
Query: 773 tgttgtag 780
||||||||
Sbjct: 181 tgttgtag 188