Miyakogusa Predicted Gene
- Lj0g3v0215509.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0215509.1 Non Chatacterized Hit- tr|A5APC0|A5APC0_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,96.25,5.00264e-43,LSM,Ribonucleoprotein LSM domain; no
description,NULL; Sm-like ribonucleoproteins,Like-Sm (LSM)
doma,CUFF.13894.1
(243 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC76985 homologue to UniRef100_A7PS14 Cluster: Chromoso... 470 e-132
gnl|LJGI|AV414240 homologue to UniRef100_Q38JH9 Cluster: Glycine... 361 1e-99
gnl|LJGI|AU088900 homologue to UniRef100_A7PS14 Cluster: Chromos... 90 7e-18
>gnl|LJGI|TC76985 homologue to UniRef100_A7PS14 Cluster: Chromosome chr14
scaffold_27, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_27, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (45%)
Length = 1032
Score = 470 bits (237), Expect = e-132
Identities = 237/237 (100%)
Strand = Plus / Plus
Query: 7 cctctttcccttctcaagactgctcaaggccaccctatgttggtggagctgaaaaacggg 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 cctctttcccttctcaagactgctcaaggccaccctatgttggtggagctgaaaaacggg 69
Query: 67 gagacatacaacgggcatttggttaattgcgatacatggatgaacatccatcttcgagaa 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 gagacatacaacgggcatttggttaattgcgatacatggatgaacatccatcttcgagaa 129
Query: 127 gtcatttgcaccaataaagatggagatagattttggcggatgcctgagtgctacattcga 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gtcatttgcaccaataaagatggagatagattttggcggatgcctgagtgctacattcga 189
Query: 187 ggcaatacaattaagtaccttcgagttcctgatgaggttattgacaaagttcaggaa 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ggcaatacaattaagtaccttcgagttcctgatgaggttattgacaaagttcaggaa 246
>gnl|LJGI|AV414240 homologue to UniRef100_Q38JH9 Cluster: Glycine rich protein-like;
n=1; Solanum tuberosum|Rep: Glycine rich protein-like -
Solanum tuberosum (Potato), partial (41%)
Length = 243
Score = 361 bits (182), Expect = 1e-99
Identities = 182/182 (100%)
Strand = Plus / Plus
Query: 1 atgcttcctctttcccttctcaagactgctcaaggccaccctatgttggtggagctgaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 atgcttcctctttcccttctcaagactgctcaaggccaccctatgttggtggagctgaaa 121
Query: 61 aacggggagacatacaacgggcatttggttaattgcgatacatggatgaacatccatctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 aacggggagacatacaacgggcatttggttaattgcgatacatggatgaacatccatctt 181
Query: 121 cgagaagtcatttgcaccaataaagatggagatagattttggcggatgcctgagtgctac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cgagaagtcatttgcaccaataaagatggagatagattttggcggatgcctgagtgctac 241
Query: 181 at 182
||
Sbjct: 242 at 243
>gnl|LJGI|AU088900 homologue to UniRef100_A7PS14 Cluster: Chromosome chr14
scaffold_27, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_27, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (12%)
Length = 208
Score = 89.7 bits (45), Expect = 7e-18
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 10 ctttcccttctcaagactgctcaaggccaccctatgttggtggagctgaaaaacggggag 69
|||||||||||||| ||||| ||||| |||| ||||||||||| |||||||| ||||||
Sbjct: 73 ctttcccttctcaaaactgcccaagggcaccnaatgttggtgganctgaaaaatggggag 132
Query: 70 acatacaacgggcatttggttaa 92
|| || || ||||||||||||||
Sbjct: 133 acttataatgggcatttggttaa 155