Miyakogusa Predicted Gene

Lj0g3v0214869.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0214869.1 Non Chatacterized Hit- tr|B4FC91|B4FC91_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,66.67,1e-16,seg,NULL,CUFF.13851.1
         (315 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV409440 similar to UniRef100_A7QYN2 Cluster: Chromosom...   153   8e-37
gnl|LJGI|AV769576 similar to UniRef100_A7QYN2 Cluster: Chromosom...    76   1e-13

>gnl|LJGI|AV409440 similar to UniRef100_A7QYN2 Cluster: Chromosome undetermined
           scaffold_252, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_252,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (15%)
          Length = 344

 Score =  153 bits (77), Expect = 8e-37
 Identities = 105/113 (92%), Gaps = 1/113 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatctgccaaataatattacccagtgaagaagaagttacacaattgtttattgatgtg 60
           |||| |||| || |||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 230 atgaactgcaaactaatattacc-agtgaagaagaagttacacaattgcttattgatgtg 288

                                                                
Query: 61  tgtgaagagtgtgaagagctactagtggaggcaggtagaaagtgtaggttggc 113
           ||||||||||||||||||||||| || |||||||||||||||| |||||||||
Sbjct: 289 tgtgaagagtgtgaagagctactggttgaggcaggtagaaagtataggttggc 341


>gnl|LJGI|AV769576 similar to UniRef100_A7QYN2 Cluster: Chromosome undetermined
           scaffold_252, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_252,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (14%)
          Length = 556

 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 38/38 (100%)
 Strand = Plus / Minus

                                                 
Query: 258 tgctatgctggtgaaaggcaaagtttatgcaccggatg 295
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgctatgctggtgaaaggcaaagtttatgcaccggatg 519