Miyakogusa Predicted Gene
- Lj0g3v0214639.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0214639.1 tr|G7IKC9|G7IKC9_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_2g021160 PE=4 SV=1,48.53,0.0000006,F_box_assoc_1:
F-box protein interaction domain,F-box associated interaction domain;
no description,,CUFF.13831.1
(818 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC82797 similar to UniRef100_Q2HWB4 Cluster: Cyclin-lik... 272 3e-72
gnl|LJGI|TC76533 similar to UniRef100_Q2HWB4 Cluster: Cyclin-lik... 252 3e-66
gnl|LJGI|TC75940 similar to UniRef100_Q2HWB4 Cluster: Cyclin-lik... 204 6e-52
gnl|LJGI|AV423520 similar to UniRef100_Q2HWB4 Cluster: Cyclin-li... 157 1e-37
gnl|LJGI|TC65255 similar to UniRef100_Q2HWB4 Cluster: Cyclin-lik... 131 7e-30
gnl|LJGI|DC593954 similar to UniRef100_Q2HWB4 Cluster: Cyclin-li... 121 7e-27
gnl|LJGI|TC77565 similar to UniRef100_Q2HWB4 Cluster: Cyclin-lik... 109 3e-23
gnl|LJGI|BW621082 similar to UniRef100_Q2HWB4 Cluster: Cyclin-li... 103 2e-21
gnl|LJGI|DC597111 similar to UniRef100_Q2HWB4 Cluster: Cyclin-li... 96 4e-19
gnl|LJGI|TC58483 similar to UniRef100_Q2HWB4 Cluster: Cyclin-lik... 96 4e-19
gnl|LJGI|TC74128 similar to UniRef100_A7Q9Q9 Cluster: Chromosome... 76 4e-13
gnl|LJGI|FS328144 similar to UniRef100_A7Q9Q9 Cluster: Chromosom... 58 9e-08
gnl|LJGI|GO011373 similar to UniRef100_A5GKE2 Cluster: Permease ... 52 6e-06
>gnl|LJGI|TC82797 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (9%)
Length = 1418
Score = 272 bits (137), Expect = 3e-72
Identities = 534/664 (80%), Gaps = 28/664 (4%)
Strand = Plus / Plus
Query: 27 cggcgactcccctcacgcgccgccgcttccacccattccgttcgacctcgtggtggaaat 86
||||||||| | ||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 159 cggcgactcacttcacgcgccgccgcttccatcccttccgttcgacctcgtggtggaaat 218
Query: 87 cctctgcagactcccggtaaagtcactcttgcaattccgctgcgtatgcaaatcttggaa 146
|||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||
Sbjct: 219 cctctgcagactcccggtaaagcccctcttgcaattccgctgcgtatgcaaatcctggaa 278
Query: 147 ttctctaatctctgatcccaaatttgccaaaaagcacctccattgttcaccggcgaactt 206
||| ||||||| |||||||||||||||||||| |||||||||| ||||||| | ||||
Sbjct: 279 atctttaatctccgatcccaaatttgccaaaaaacacctccattcttcaccgtcagactt 338
Query: 207 cacccgccaccacctcatcgcaagctacctcaacgactcacgccagctccgtctcaaggc 266
|| |||||||| |||||||| || | ||| |||| || | ||||| ||
Sbjct: 339 catccgccaccgcctcatcgtaaaccaccattccgacgacagcgggttccgt------gc 392
Query: 267 tcacccgctcctctctgttttcgacaccgtgcc------cgccaccgccgctcagcttga 320
| |||| |||||||| |||||| |||||||||| |||||||||| ||||||||||
Sbjct: 393 ttaccctctcctctccgttttcaacaccgtgcctgccgccgccaccgccactcagcttga 452
Query: 321 gtaccctctgaaaaaatataaaataaatattgatcaaattgttggctcttgcaatggcat 380
||||||||||| | | ||| | || || ||| |||||||||||||||||| |
Sbjct: 453 gtaccctctgatcattcagaaatt---taactatgtaatcgttggctcttgcaatggcgt 509
Query: 381 tgtctgtgttgccaaccatcaaaactttactcttttctggaacccttttactcggagatt 440
||||| || || | ||| | |||| ||||||| |||||||||| ||||| |||||
Sbjct: 510 cctctgttttttcatcgatcggagctttgctcttttatggaacccttccactcgaagatt 569
Query: 441 caaaaaatccccacctttggaaaatcca-----aatatacttggttacacagtatatggt 495
||| ||||| || || ||||||||||| || | | | ||| |||| ||| |||
Sbjct: 570 caagaaatcgccgtctctggaaaatccacgcctaaaaga--tagtttcacaaaatacggt 627
Query: 496 ttcggttatgattattttgctgacagttataaagtagttgcagttttctgctttgaaggt 555
|||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| |
Sbjct: 628 ttcggttatgatcattttgctgacagttacaaagtagttgcagttttctgctatgaagat 687
Query: 556 ggtgaagtttggttttaccaccgaacacaagtgaaggttcatactttgggtacaaattgt 615
||||| | | ||||| | |||||||| || |||||||||| |||||| |||||
Sbjct: 688 ggtgatagtggtctttacaa---aacacaagccaatattcatactttaggtacacattgt 744
Query: 616 tggaggaggattcaagggttgccttcttgtttccctgttgaatcaggaaaatttgtaagt 675
|||||||||||||||| | | | ||||| |||||||| |||||| || |||||| |||
Sbjct: 745 tggaggaggattcaagagctcc---cttgtgtccctgttcaatcagcaatatttgtgagt 801
Query: 676 ggca 679
||||
Sbjct: 802 ggca 805
Score = 85.7 bits (43), Expect = 4e-16
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 729 tattatttctctggatttggggaatgagtgttatcaaaagattttgcagcctgatgatta 788
||||||||||| ||||||| |||| |||||||||||||| |||||| ||||||||||||
Sbjct: 882 tattatttctcaggatttgaggaaggagtgttatcaaaaacttttgctgcctgatgatta 941
Query: 789 tgggcatgatg 799
||| |||||||
Sbjct: 942 tggacatgatg 952
>gnl|LJGI|TC76533 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (9%)
Length = 474
Score = 252 bits (127), Expect = 3e-66
Identities = 154/163 (94%)
Strand = Plus / Plus
Query: 62 ttccgttcgacctcgtggtggaaatcctctgcagactcccggtaaagtcactcttgcaat 121
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 173 ttccgttcgacctcgtggtggaaatcctctgcagactcccggtgaattccctcttgcaat 232
Query: 122 tccgctgcgtatgcaaatcttggaattctctaatctctgatcccaaatttgccaaaaagc 181
||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |
Sbjct: 233 tccgctgcgtatgcaaatcctggaattctctcatctccgatcccaaatttgccaaaaacc 292
Query: 182 acctccattgttcaccggcgaacttcacccgccaccacctcat 224
||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 293 acctccattgttcaccgccggacttcacccgccaccacctcat 335
>gnl|LJGI|TC75940 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (9%)
Length = 585
Score = 204 bits (103), Expect = 6e-52
Identities = 224/270 (82%), Gaps = 22/270 (8%)
Strand = Plus / Plus
Query: 62 ttccgttcgacctcgtggtggaaatcctctgcagactcccggtaaagtcactcttgcaat 121
||||||||||||||||||||||||||||||||||||||||||| || || ||||||| |
Sbjct: 308 ttccgttcgacctcgtggtggaaatcctctgcagactcccggtgaattccctcttgcgac 367
Query: 122 tccgctgcgtatgcaaatcttggaattctctaatctctgatcccaaatttgccaaaaagc 181
| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct: 368 tgcgctgcgtatgcaaatcatggaattctctaatctccgatcccaaatttgccaaaaaac 427
Query: 182 acctccattgttcaccggcgaacttcacccgccaccacctcatcgcaagctacctcaacg 241
| |||||||||||||||||||| ||||| || | |||
Sbjct: 428 a----------------------ttcacccgccaccacctcatgacaagcgacatggacg 465
Query: 242 actcacgccagctccgtctcaaggctcacccgctcctctctgttttcgacaccgtgcccg 301
|||||||| || ||||||||||||| ||||||||||||| |||| |||| |||||||||
Sbjct: 466 actcacgcaagtaccgtctcaaggcttacccgctcctctccgtttccgacgccgtgcccg 525
Query: 302 ccaccgccgctcagcttgagtaccctctga 331
||||||| |||||||||||||||||||||
Sbjct: 526 ccaccgcaactcagcttgagtaccctctga 555
>gnl|LJGI|AV423520 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (15%)
Length = 468
Score = 157 bits (79), Expect = 1e-37
Identities = 159/185 (85%), Gaps = 3/185 (1%)
Strand = Plus / Plus
Query: 44 cgccgccgcttccacccattccgttcgacctcgtggtggaaatcctctgcagactcccgg 103
|||||||||| ||| || |||||||||| ||||||||||||||||| ||||| ||||| |
Sbjct: 148 cgccgccgctgccaacccttccgttcgagctcgtggtggaaatcctatgcaggctccccg 207
Query: 104 taaagtcactcttgcaattccgctgcgtatgcaaatcttggaattctctaatctc---tg 160
| ||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct: 208 tgaagtccctcttgcaattccgctgcgtatgcaagtcctggaattctctaatctccggtg 267
Query: 161 atcccaaatttgccaaaaagcacctccattgttcaccggcgaacttcacccgccaccacc 220
| |||||||| |||| ||| ||||| | |||||||| | ||||||| ||||||||||
Sbjct: 268 accccaaattcgccagaaaacaccttcgctgttcacctaaggacttcacgcgccaccacc 327
Query: 221 tcatc 225
|||||
Sbjct: 328 tcatc 332
>gnl|LJGI|TC65255 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (8%)
Length = 703
Score = 131 bits (66), Expect = 7e-30
Identities = 147/174 (84%)
Strand = Plus / Plus
Query: 46 ccgccgcttccacccattccgttcgacctcgtggtggaaatcctctgcagactcccggta 105
|||||||| ||| |||| ||||||||||||||||||||||| || ||||| || || ||
Sbjct: 144 ccgccgctgccaaccatcccgttcgacctcgtggtggaaattctatgcaggcttcctgtg 203
Query: 106 aagtcactcttgcaattccgctgcgtatgcaaatcttggaattctctaatctctgatccc 165
|| || ||||||||| |||||||||||||||| || ||||| | |||||||| ||||||
Sbjct: 204 aaatccctcttgcaactccgctgcgtatgcaagtcatggaaaaccctaatctccgatccc 263
Query: 166 aaatttgccaaaaagcacctccattgttcaccggcgaacttcacccgccaccac 219
|||| ||||||| |||||||| ||||||||| | |||||||| ||||||||
Sbjct: 264 gaattcgccaaaacgcacctccgctgttcaccgaaggacttcacctgccaccac 317
>gnl|LJGI|DC593954 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (9%)
Length = 574
Score = 121 bits (61), Expect = 7e-27
Identities = 148/177 (83%)
Strand = Plus / Plus
Query: 49 ccgcttccacccattccgttcgacctcgtggtggaaatcctctgcagactcccggtaaag 108
||||||||| | |||||||||||||| | | ||||||||| ||||| |||||||| |||
Sbjct: 41 ccgcttccatctcttccgttcgacctcatcgaggaaatcctgtgcaggctcccggtgaag 100
Query: 109 tcactcttgcaattccgctgcgtatgcaaatcttggaattctctaatctctgatcccaaa 168
| || ||| |||||||| ||| ||||| || |||||||| |||||||| |||||||
Sbjct: 101 ccgctgctgcgattccgctccgtttgcaagtcctggaattccctaatctccgatcccatg 160
Query: 169 tttgccaaaaagcacctccattgttcaccggcgaacttcacccgccaccacctcatc 225
|| ||||||| |||||||| ||||| ||| || |||||||||||||||||||||||
Sbjct: 161 ttcgccaaaatgcacctccgctgttcgccgacggacttcacccgccaccacctcatc 217
>gnl|LJGI|TC77565 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (19%)
Length = 803
Score = 109 bits (55), Expect = 3e-23
Identities = 148/179 (82%)
Strand = Plus / Plus
Query: 44 cgccgccgcttccacccattccgttcgacctcgtggtggaaatcctctgcagactcccgg 103
|||||||| ||||| | |||||||||| || | ||||||||||| ||||| ||||| |
Sbjct: 99 cgccgccgtttccaactcttccgttcgaacttggagtggaaatcctatgcaggctcccag 158
Query: 104 taaagtcactcttgcaattccgctgcgtatgcaaatcttggaattctctaatctctgatc 163
| || || || |||||| |||||||||| ||||| || ||||| || |||||||| ||||
Sbjct: 159 tgaaatcgctgttgcaactccgctgcgtttgcaagtcctggaaatcgctaatctccgatc 218
Query: 164 ccaaatttgccaaaaagcacctccattgttcaccggcgaacttcacccgccaccacctc 222
||||||| |||||||| ||||||| ||||| || || ||||||||||||||| ||||
Sbjct: 219 ccaaattcgccaaaaaccacctccgctgttcgtcgacggacttcacccgccaccgcctc 277
>gnl|LJGI|BW621082 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (9%)
Length = 462
Score = 103 bits (52), Expect = 2e-21
Identities = 124/148 (83%)
Strand = Plus / Plus
Query: 40 cacgcgccgccgcttccacccattccgttcgacctcgtggtggaaatcctctgcagactc 99
|||||||||||||||||||| |||||| |||||| | ||||||||||| ||||| |||
Sbjct: 55 cacgcgccgccgcttccacctcttccgtccgaccttggtgtggaaatcctatgcaggctc 114
Query: 100 ccggtaaagtcactcttgcaattccgctgcgtatgcaaatcttggaattctctaatctct 159
|||| || || || |||||| |||||||||| || || || ||||| | |||||||||
Sbjct: 115 tcggtgaaatcgctgttgcaactccgctgcgtttgtaagtcctggaaaaccctaatctct 174
Query: 160 gatcccaaatttgccaaaaagcacctcc 187
||||||||||| |||||| | |||||||
Sbjct: 175 gatcccaaattcgccaaacaccacctcc 202
>gnl|LJGI|DC597111 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (9%)
Length = 591
Score = 95.6 bits (48), Expect = 4e-19
Identities = 152/186 (81%), Gaps = 3/186 (1%)
Strand = Plus / Plus
Query: 43 gcgccgccgcttccacccattccgttcgacctcgtggtggaaatcctctgcagactcccg 102
||||| ||||||||| | ||||||| || ||||||||||||||| | ||||| |||||
Sbjct: 82 gcgccaccgcttccatcacttccgtttgatctcgtggtggaaatcatgtgcaggctccct 141
Query: 103 gtaaagtcactcttgcaattccgctgcgtatgcaaatcttggaattctctaatctctgat 162
|| ||| | | |||| |||||||||||| || || || ||||| || ||||||||||||
Sbjct: 142 gtgaagccggtgttgcgattccgctgcgtttgtaagtcgtggaaatcactaatctctgat 201
Query: 163 cccaaatttgccaaaaagcacctccattgttcacc---ggcgaacttcacccgccaccac 219
|||| ||| || ||||||||||||| ||||| || | || ||||||||||||| |||
Sbjct: 202 cccagattcgctaaaaagcacctccgctgttcgccgaagacggacttcacccgccatcac 261
Query: 220 ctcatc 225
||||||
Sbjct: 262 ctcatc 267
>gnl|LJGI|TC58483 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (12%)
Length = 786
Score = 95.6 bits (48), Expect = 4e-19
Identities = 152/186 (81%), Gaps = 3/186 (1%)
Strand = Plus / Plus
Query: 43 gcgccgccgcttccacccattccgttcgacctcgtggtggaaatcctctgcagactcccg 102
||||| ||||||||| | ||||||| || ||||||||||||||| | ||||| |||||
Sbjct: 129 gcgccaccgcttccatcacttccgtttgatctcgtggtggaaatcatgtgcaggctccct 188
Query: 103 gtaaagtcactcttgcaattccgctgcgtatgcaaatcttggaattctctaatctctgat 162
|| ||| | | |||| |||||||||||| || || || ||||| || ||||||||||||
Sbjct: 189 gtgaagccggtgttgcgattccgctgcgtttgtaagtcgtggaaatcactaatctctgat 248
Query: 163 cccaaatttgccaaaaagcacctccattgttcacc---ggcgaacttcacccgccaccac 219
|||| ||| || ||||||||||||| ||||| || | || ||||||||||||| |||
Sbjct: 249 cccagattcgctaaaaagcacctccgctgttcgccgaagacggacttcacccgccatcac 308
Query: 220 ctcatc 225
||||||
Sbjct: 309 ctcatc 314
Score = 65.9 bits (33), Expect = 4e-10
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 579 aacacaagtgaaggttcatactttgggtacaaattgttggaggaggattcaag 631
||||||||| ||||||||||| |||||||| |||||||||||| ||||||||
Sbjct: 656 aacacaagtcaaggttcatacattgggtactcattgttggaggaagattcaag 708
>gnl|LJGI|TC74128 similar to UniRef100_A7Q9Q9 Cluster: Chromosome chr5 scaffold_67,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_67, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 501
Score = 75.8 bits (38), Expect = 4e-13
Identities = 116/142 (81%)
Strand = Plus / Plus
Query: 43 gcgccgccgcttccacccattccgttcgacctcgtggtggaaatcctctgcagactcccg 102
||||||||||||||| || || | | ||| ||||||| |||||||| || || | |||
Sbjct: 166 gcgccgccgcttccaacccttgcatccgagctcgtggaagaaatcctatgtagggttccg 225
Query: 103 gtaaagtcactcttgcaattccgctgcgtatgcaaatcttggaattctctaatctctgat 162
|| ||||| || |||| |||||| ||||| ||||| || |||||||| || || ||||||
Sbjct: 226 gtgaagtctcttttgcgattccggtgcgtctgcaagtcctggaattccctgatttctgat 285
Query: 163 cccaaatttgccaaaaagcacc 184
|||||||| |||| ||||||||
Sbjct: 286 cccaaattcgccagaaagcacc 307
>gnl|LJGI|FS328144 similar to UniRef100_A7Q9Q9 Cluster: Chromosome chr5 scaffold_67,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_67, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 760
Score = 58.0 bits (29), Expect = 9e-08
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 85 atcctctgcagactcccggtaaagtcactcttgcaattccgctgcgtatgcaaatcttgg 144
||||||||||| || ||||| ||||| ||||||| |||||| ||||| ||||| || |||
Sbjct: 475 atcctctgcaggcttccggtgaagtctctcttgcgattccggtgcgtctgcaagtcctgg 534
Query: 145 aattctctaatctctgatcccaaatttgccaaaaagcacct 185
||| || || || ||||||||||| |||| || ||||||
Sbjct: 535 aatctcctgatttccgatcccaaattcgccagaaggcacct 575
>gnl|LJGI|GO011373 similar to UniRef100_A5GKE2 Cluster: Permease of the
drug/metabolite transporter (DMT) superfamily; n=1;
Synechococcus sp. WH 7803|Rep: Permease of the
drug/metabolite transporter (DMT) superfamily -
Synechococcus sp. (strain WH7803), partial (7%)
Length = 738
Score = 52.0 bits (26), Expect = 6e-06
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 479 gttacacagtatatggtttcggttatgattattttgctgacagttataaagtagttgcag 538
|||||||| | ||||| || || |||||| |||| ||| ||||||||||| |||||||
Sbjct: 56 gttacacaatttatgggtttggctatgatcatttcagtgatagttataaagttgttgcag 115
Query: 539 ttttctgctttgaa 552
||||||||| ||||
Sbjct: 116 ttttctgctatgaa 129
Score = 52.0 bits (26), Expect = 6e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 654 tgaatcaggaaaatttgtaagtggcaggcttaattggttggc 695
|||| |||||| |||||| |||||||| ||||||||||||||
Sbjct: 234 tgaaacaggaagatttgtgagtggcagtcttaattggttggc 275