Miyakogusa Predicted Gene

Lj0g3v0213949.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0213949.1 tr|I0YUK2|I0YUK2_9CHLO RBP11-like subunits of RNA
polymerase OS=Coccomyxa subellipsoidea C-169 PE=4
,49.44,2e-19,RBP11-like subunits of RNA polymerase,DNA-directed RNA
polymerase, RBP11-like; RNA_pol_L_2,NULL; no ,CUFF.13782.1
         (315 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC65848 similar to UniRef100_A7NYN7 Cluster: Chromosome...   609   e-174
gnl|LJGI|TC68112 similar to UniRef100_A7NYN7 Cluster: Chromosome...   585   e-167

>gnl|LJGI|TC65848 similar to UniRef100_A7NYN7 Cluster: Chromosome chr6 scaffold_3,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr6 scaffold_3, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (98%)
          Length = 608

 Score =  609 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaacacgggtcgcactctgatgagagtaaatcaacattttctctgacagatgaggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 atggaacacgggtcgcactctgatgagagtaaatcaacattttctctgacagatgaggat 263

                                                                       
Query: 61  catacttttgcaaacgctatcagatacaccttgaatcaagatccgagagtgacattttgt 120
           ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 264 catacttttgcaaacgctatcagatactccttgaatcaagatccaagagtgacattttgt 323

                                                                       
Query: 121 gggtacagcattcctcatccttcagataatcgtgtcaatattagagtccaaacaacaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gggtacagcattcctcatccttcagataatcgtgtcaatattagagtccaaacaacaggg 383

                                                                       
Query: 181 gaaccagcccgtgaggtgctaaaagattcatgtcagcatatgatgcttatgtgccagcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaaccagcccgtgaggtgctaaaagattcatgtcagcatatgatgcttatgtgccagcat 443

                                                                       
Query: 241 gtcaagggcacttttgataaggcggtcaacgactttaaaagtaaaaagggtgggaaggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtcaagggcacttttgataaggcggtcaacgactttaaaagtaaaaagggtgggaaggat 503

                          
Query: 301 atggatatcgattag 315
           |||||||||||||||
Sbjct: 504 atggatatcgattag 518


>gnl|LJGI|TC68112 similar to UniRef100_A7NYN7 Cluster: Chromosome chr6 scaffold_3,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr6 scaffold_3, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (98%)
          Length = 706

 Score =  585 bits (295), Expect = e-167
 Identities = 310/315 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaacacgggtcgcactctgatgagagtaaatcaacattttctctgacagatgaggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 atggaacacgggtcgcactctgatgagagtaaatcaacattttctctgacagatgaggat 261

                                                                       
Query: 61  catacttttgcaaacgctatcagatacaccttgaatcaagatccgagagtgacattttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 catacttttgcaaacgctatcagatacaccttgaatcaagatccgagagtgacattttgt 321

                                                                       
Query: 121 gggtacagcattcctcatccttcagataatcgtgtcaatattagagtccaaacaacaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gggtacagcattcctcatccttcagataatcgtgtcaatattagagtccaaacaacaggg 381

                                                                       
Query: 181 gaaccagcccgtgaggtgctaaaagattcatgtcagcatatgatgcttatgtgccagcat 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gaaccagcccgtgaggtgttaaaagattcatgtcagcatatgatgcttatgtgccagcat 441

                                                                       
Query: 241 gtcaagggcacttttgataaggcggtcaacgactttaaaagtaaaaagggtgggaaggat 300
           || | ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 442 gttaggggcacttttgataaggcggtaaacgactttaaaagcaaaaagggtgggaaggat 501

                          
Query: 301 atggatatcgattag 315
           |||||||||||||||
Sbjct: 502 atggatatcgattag 516