Miyakogusa Predicted Gene
- Lj0g3v0213729.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0213729.1 tr|G7L6M8|G7L6M8_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_7g078900 PE=4 SV=1,28.85,0.15,F-box,F-box domain,
cyclin-like; no description,NULL; seg,NULL; F_box_assoc_1: F-box
protein interac,gene.g16483.t1.1
(1084 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BG662160 weakly similar to UniRef100_A7PQD5 Cluster: Ch... 280 2e-74
gnl|LJGI|TC59517 weakly similar to UniRef100_Q2HRF5 Cluster: Cyc... 141 1e-32
gnl|LJGI|CB826878 similar to UniRef100_Q9BKD3 Cluster: TSO45-4B;... 103 2e-21
gnl|LJGI|TC79482 weakly similar to UniRef100_A7Q9Q9 Cluster: Chr... 98 1e-19
gnl|LJGI|TC73392 98 1e-19
gnl|LJGI|TC78617 similar to UniRef100_A2Q4Y0 Cluster: F-box prot... 92 9e-18
gnl|LJGI|GO035798 weakly similar to UniRef100_Q12X80 Cluster: 4F... 90 3e-17
gnl|LJGI|TC79437 84 2e-15
gnl|LJGI|TC78296 84 2e-15
gnl|LJGI|DC598731 similar to UniRef100_Q2HS69 Cluster: Cyclin-li... 76 5e-13
gnl|LJGI|TC67010 weakly similar to UniRef100_A4UV34 Cluster: F-b... 68 1e-10
>gnl|LJGI|BG662160 weakly similar to UniRef100_A7PQD5 Cluster: Chromosome chr18
scaffold_24, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_24, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (12%)
Length = 430
Score = 280 bits (141), Expect = 2e-74
Identities = 243/277 (87%)
Strand = Plus / Plus
Query: 15 gtttctctgtgaagaactccttcaagaaatcttattattgcttccagtgaaatctctggt 74
||||||| ||||||||||| | ||||||||| | || |||||| ||||||||||||||
Sbjct: 4 gtttctccctgaagaactccggctagaaatcttgtcatggcttccggtgaaatctctggt 63
Query: 75 gcggttcaagtgtgtgtctcagtcatggaagtctatcatctccgattctcaattcatcaa 134
||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gcgattcaggtgtgtgtctaagtcatggaagtctatcatctccgattctcaattcatcaa 123
Query: 135 actccaccttcaccgatcatcttctaaaacaaaaaacacagatttcgcccacctccgctt 194
|||||||||||| ||||||||||||| ||||| |||||||||||||||| |||||| |
Sbjct: 124 actccaccttcatcgatcatcttctacaacaagaaacacagatttcgcctacctccaatc 183
Query: 195 actgttaaattcgccatcggaaagccgtttagccaccactgtagcaatccccgatgatta 254
|||| ||| ||||||| | ||||||||| |||| ||||| |||||||||||||||| ||
Sbjct: 184 actgataacttcgccacggaaaagccgttcagcctccactatagcaatccccgatgacta 243
Query: 255 catcttcagtggaacctgtaacggcttgatttgtttg 291
| |||| |||||||||| ||||| ||| ||||||||
Sbjct: 244 cgacttctgtggaacctgcaacgggttggtttgtttg 280
Score = 54.0 bits (27), Expect = 2e-06
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 337 cgtttctggaacccagctacaagggtaatgtctcaacattcgccacctcta 387
||||| ||||||||||||| ||| ||||||||||| |||||||||||||
Sbjct: 326 cgtttatggaacccagctatgaggtcaatgtctcaacgttcgccacctcta 376
>gnl|LJGI|TC59517 weakly similar to UniRef100_Q2HRF5 Cluster: Cyclin-like F-box; n=1;
Medicago truncatula|Rep: Cyclin-like F-box - Medicago
truncatula (Barrel medic), partial (42%)
Length = 1382
Score = 141 bits (71), Expect = 1e-32
Identities = 125/143 (87%)
Strand = Plus / Plus
Query: 10 ccaccgtttctctgtgaagaactccttcaagaaatcttattattgcttccagtgaaatct 69
|||||| ||||| |||||||||| || |||||||||||| || ||||| |||||||||
Sbjct: 69 ccaccggttctccctgaagaactcgttgaagaaatcttatcttttcttccggtgaaatct 128
Query: 70 ctggtgcggttcaagtgtgtgtctcagtcatggaagtctatcatctccgattctcaattc 129
|| ||||| ||||||| |||||| |||||||||| ||| ||||||||| ||| ||||||
Sbjct: 129 ctagtgcgattcaagtctgtgtcaaagtcatggaactctttcatctccggttcccaattc 188
Query: 130 atcaaactccaccttcaccgatc 152
|||||||||||||||||||||||
Sbjct: 189 atcaaactccaccttcaccgatc 211
Score = 85.7 bits (43), Expect = 5e-16
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 796 cattttgcggtttggcaaatgaaggagtttggagtgcacaagtcttggactcggttgtt 854
||||||||| ||||||||||||| ||||||||||||||||| |||||||||| ||||||
Sbjct: 880 cattttgcgatttggcaaatgaaagagtttggagtgcacaattcttggactcagttgtt 938
Score = 54.0 bits (27), Expect = 2e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 422 ttggttatgattgttcaactgacacctacaa 452
|||||||||||||||||| ||||||||||||
Sbjct: 470 ttggttatgattgttcaagtgacacctacaa 500
Score = 54.0 bits (27), Expect = 2e-06
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 575 atgcagtttatgtgaataacactcttaattggttagcaattcgacca 621
|||||||| |||||| ||||||||||||||||||||| ||| ||||
Sbjct: 632 atgcagttaatgtgagcaacactcttaattggttagcatttctacca 678
>gnl|LJGI|CB826878 similar to UniRef100_Q9BKD3 Cluster: TSO45-4B; n=1; Taenia
solium|Rep: TSO45-4B - Taenia solium (Pork tapeworm),
partial (5%)
Length = 635
Score = 103 bits (52), Expect = 2e-21
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 797 attttgcggtttggcaaatgaaggagtttggagtgcacaagtcttggactcggttgttca 856
|||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 445 attttgtggtttggcaaatgaaggagtttggagtgcacaagtcatggactcagttgttca 504
Query: 857 acat 860
||||
Sbjct: 505 acat 508
Score = 56.0 bits (28), Expect = 5e-07
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 97 tcatggaagtctatcatctccgattctcaattcatcaaactccaccttcaccgatcatct 156
||||| |||||| |||||||||||||| |||| | ||||| ||||||||||| | ||||
Sbjct: 117 tcatgtaagtctctcatctccgattctgcattcgtgaaacttcaccttcaccggtaatct 176
Query: 157 tcta 160
||||
Sbjct: 177 tcta 180
Score = 56.0 bits (28), Expect = 5e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 922 tctgagaatggcgatgccttgttgttgtcaaaattgggttggtcccaa 969
||||||||||| ||||||||||||||||||| || ||| ||||||||
Sbjct: 563 tctgagaatggggatgccttgttgttgtcaacatatggtgggtcccaa 610
>gnl|LJGI|TC79482 weakly similar to UniRef100_A7Q9Q9 Cluster: Chromosome chr5
scaffold_67, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr5 scaffold_67, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (10%)
Length = 551
Score = 97.6 bits (49), Expect = 1e-19
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 500 atgtttacaacatgggcgatacttgttggagaacaattcaagattcccatcttccctcta 559
|||||||||||||||| |||| ||||||||||||||||||| ||||| || | || |||
Sbjct: 397 atgtttacaacatgggtgataattgttggagaacaattcaaatttcccctcatgccccta 456
Query: 560 tgcatcctaaatgtgatgcagtttatgtgaataacactcttaattggttagca 612
|||||| || | |||||||||||||| ||||||||||||||||||||||
Sbjct: 457 tgcatctccaaggatctgcagtttatgtgagtaacactcttaattggttagca 509
Score = 67.9 bits (34), Expect = 1e-10
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 417 tggggttggttatgattgttcaactgacacctacaaggtggt 458
|||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 326 tgggtttggttatgattgttcaagtgacacctacaaggtggt 367
Score = 52.0 bits (26), Expect = 7e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 343 tggaacccagctacaagggtaatgtctcaacattcgccacct 384
||||| |||||||||||| |||||||||| |||||||||||
Sbjct: 258 tggaatccagctacaaggacaatgtctcaagattcgccacct 299
>gnl|LJGI|TC73392
Length = 647
Score = 97.6 bits (49), Expect = 1e-19
Identities = 97/113 (85%)
Strand = Plus / Plus
Query: 500 atgtttacaacatgggcgatacttgttggagaacaattcaagattcccatcttccctcta 559
|||||||||||||||| |||| ||||||||||||||||||| ||||| || | || |||
Sbjct: 433 atgtttacaacatgggtgataattgttggagaacaattcaaatttcccctcatgccccta 492
Query: 560 tgcatcctaaatgtgatgcagtttatgtgaataacactcttaattggttagca 612
|||||| || | |||||||||||||| ||||||||||||||||||||||
Sbjct: 493 tgcatctccaaggatctgcagtttatgtgagtaacactcttaattggttagca 545
Score = 58.0 bits (29), Expect = 1e-07
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 336 ccgtttctggaacccagctacaagggtaatgtctcaacattcgccacct 384
|||||| ||||| |||||||||||| |||||||||| |||||||||||
Sbjct: 285 ccgtttttggaatccagctacaaggacaatgtctcaagattcgccacct 333
Score = 52.0 bits (26), Expect = 7e-06
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 422 ttggttatgatt-gttcaactgacacctacaaggtggt 458
|||||||||||| |||||| ||||||||||||||||||
Sbjct: 366 ttggttatgatttgttcaagtgacacctacaaggtggt 403
>gnl|LJGI|TC78617 similar to UniRef100_A2Q4Y0 Cluster: F-box protein interaction
domain; n=1; Medicago truncatula|Rep: F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (8%)
Length = 518
Score = 91.7 bits (46), Expect = 9e-18
Identities = 94/110 (85%)
Strand = Plus / Plus
Query: 972 ccaagcagttctctatacccagaaagacaataaattagaagtcacaaacgttgctaacta 1031
||||||||||||||||| ||||| ||| || ||||| |||| |||||| ||| |||| |
Sbjct: 210 ccaagcagttctctataaccagagagaaaagaaattcgaagacacaaaaattggtaacaa 269
Query: 1032 catctttgattgctatgccatgaattacattgaaagcttggttccacctt 1081
|||| ||| || ||||| || |||||||||||||||||||||| ||||||
Sbjct: 270 catcgttggttcctatgtcaggaattacattgaaagcttggtttcacctt 319
Score = 79.8 bits (40), Expect = 3e-14
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 798 ttttgcggtttggcaaatgaaggagtttggagtgcacaagtcttggactcggttgttcaa 857
||||| ||| ||||||||||||||||||||||||||| |||||||||||| ||||| ||
Sbjct: 54 ttttgtggtatggcaaatgaaggagtttggagtgcacgagtcttggactcaattgtttaa 113
Query: 858 catt 861
||||
Sbjct: 114 catt 117
>gnl|LJGI|GO035798 weakly similar to UniRef100_Q12X80 Cluster: 4Fe-4S ferredoxin,
iron-sulfur binding; n=1; Methanococcoides burtonii DSM
6242|Rep: 4Fe-4S ferredoxin, iron-sulfur binding -
Methanococcoides burtonii (strain DSM 6242), partial
(10%)
Length = 581
Score = 89.7 bits (45), Expect = 3e-17
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 805 gtttggcaaatgaaggagtttggagtgcacaagtcttggactcggttgttcaacatt 861
|||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||
Sbjct: 78 gtttggcaaatgaaggagtttggagtacacaagtcttggactcagttgttgaacatt 134
>gnl|LJGI|TC79437
Length = 744
Score = 83.8 bits (42), Expect = 2e-15
Identities = 93/110 (84%)
Strand = Plus / Plus
Query: 972 ccaagcagttctctatacccagaaagacaataaattagaagtcacaaacgttgctaacta 1031
||||||||||||||||| ||||| ||| ||||||||||||| ||| ||| | |||||| |
Sbjct: 313 ccaagcagttctctataaccagagagataataaattagaagacacgaacatcgctaacaa 372
Query: 1032 catctttgattgctatgccatgaattacattgaaagcttggttccacctt 1081
|||| ||| || ||||| || | ||||||||||||| ||| || ||||||
Sbjct: 373 catcgttggttcctatgtcaggcattacattgaaagtttgatttcacctt 422
>gnl|LJGI|TC78296
Length = 551
Score = 83.8 bits (42), Expect = 2e-15
Identities = 93/110 (84%)
Strand = Plus / Plus
Query: 972 ccaagcagttctctatacccagaaagacaataaattagaagtcacaaacgttgctaacta 1031
||||||||||||||||| ||||| ||| ||||||||||||| ||| || | |||||| |
Sbjct: 268 ccaagcagttctctataaccagagagataataaattagaagacacgaaaatcgctaacaa 327
Query: 1032 catctttgattgctatgccatgaattacattgaaagcttggttccacctt 1081
|||| ||| || ||||| || ||||||||||||||| ||| || ||||||
Sbjct: 328 catcgttggttcctatgtcaggaattacattgaaagtttgatttcacctt 377
>gnl|LJGI|DC598731 similar to UniRef100_Q2HS69 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (14%)
Length = 592
Score = 75.8 bits (38), Expect = 5e-13
Identities = 95/114 (83%)
Strand = Plus / Plus
Query: 40 gaaatcttattattgcttccagtgaaatctctggtgcggttcaagtgtgtgtctcagtca 99
|||||||||| || | |||| || |||||||||||||| |||| |||||| || |||||
Sbjct: 64 gaaatcttatcatgggttcctgtaaaatctctggtgcgattcaggtgtgtatccaagtca 123
Query: 100 tggaagtctatcatctccgattctcaattcatcaaactccaccttcaccgatca 153
||||| ||| ||||||| ||| |||||||| | || || ||||||||| |||||
Sbjct: 124 tggaactctctcatctctgatcctcaattcgtgaacctgcaccttcacagatca 177
Score = 58.0 bits (29), Expect = 1e-07
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 422 ttggttatgattgttcaactgacacctacaaggtggt 458
||||||||||||||| || ||||||||||||||||||
Sbjct: 493 ttggttatgattgtttaagtgacacctacaaggtggt 529
>gnl|LJGI|TC67010 weakly similar to UniRef100_A4UV34 Cluster: F-box domain-containing
protein; n=2; Solanum|Rep: F-box domain-containing
protein - Solanum tuberosum (Potato), partial (15%)
Length = 1074
Score = 67.9 bits (34), Expect = 1e-10
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 417 tggggttggttatgattgttcaactgacacctacaaggtggt 458
|||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 497 tgggtttggttatgattgttcaagtgacacctacaaggtggt 538
Score = 67.9 bits (34), Expect = 1e-10
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 500 atgtttacaacatgggcgatacttgttggagaacaattcaagattcccatcttccctcta 559
|||||||||||||||| |||| ||||||||||||||||||| ||||| || | || |||
Sbjct: 568 atgtttacaacatgggtgataattgttggagaacaattcaaatttcccctcatgccccta 627
Query: 560 tgcatc 565
||||||
Sbjct: 628 tgcatc 633
Score = 58.0 bits (29), Expect = 1e-07
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 336 ccgtttctggaacccagctacaagggtaatgtctcaacattcgccacct 384
|||||| ||||| |||||||||||| |||||||||| |||||||||||
Sbjct: 422 ccgtttttggaatccagctacaaggacaatgtctcaagattcgccacct 470