Miyakogusa Predicted Gene

Lj0g3v0213119.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0213119.1 Non Chatacterized Hit- tr|G3W3N0|G3W3N0_SARHA
Uncharacterized protein OS=Sarcophilus harrisii
GN=RAB,36.9,8e-19,PUTATIVE UNCHARACTERIZED PROTEIN,NULL; KELCH REPEAT
DOMAIN,NULL; no description,Kelch-type beta prop,CUFF.13706.1
         (954 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC61662 similar to UniRef100_UPI0000162DF4 Cluster: kel...   149   4e-35

>gnl|LJGI|TC61662 similar to UniRef100_UPI0000162DF4 Cluster: kelch repeat-containing
            protein; n=1; Arabidopsis thaliana|Rep: kelch
            repeat-containing protein - Arabidopsis thaliana, partial
            (40%)
          Length = 1042

 Score =  149 bits (75), Expect = 4e-35
 Identities = 286/358 (79%), Gaps = 3/358 (0%)
 Strand = Plus / Plus

                                                                        
Query: 26   gtgcggcatttgttggcaaaaggctattcatatttggtggttttggaaaatctcctgaaa 85
            |||| ||| ||||||||||| |||||| ||| |||||||||| |||||||||| | || |
Sbjct: 679  gtgcagcagttgttggcaaacggctatacatctttggtggttgtggaaaatctgcagata 738

                                                                        
Query: 86   atatcaatgatttctgctacaatgatctttacatattggatacagagacgtttgtttgga 145
            | | ||||||  ||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 739  acaacaatgaggtctactacaatgatctttacatattgaatacagagacgtttgtttgga 798

                                                                        
Query: 146  cgcgtcctacaacattgggcactccaccatgtcctcgccatggccatacttgctcatctt 205
             | || |||||||||  ||||||||||||| ||||||  || |||| | |||||| ||||
Sbjct: 799  agtgtgctacaacatcaggcactccaccatctcctcgtgatagccacagttgctcctctt 858

                                                                        
Query: 206  gggnnnnnnntattgttgtaataggtggtggtgtagatgaacttgataaatatgtctctg 265
            ||         ||  ||||  ||   |  |||| ||||   | |||| | ||| | ||||
Sbjct: 859  ggaaaaacaaaatcattgtggta---gcgggtgaagatagccgtgattattatttgtctg 915

                                                                        
Query: 266  atgtccatatcctggacactgatactttaatttggagagaactgcatacatcaggcaaag 325
            | ||||||||||| || ||||||||| |||||||||| || |||   || |||||| || 
Sbjct: 916  acgtccatatccttgatactgatactctaatttggagggagctggtcacttcaggccaaa 975

                                                                      
Query: 326  tgttgccacctcgagcgggtcattctacagtttcttttggcaagaacttgtttgtttt 383
             |||| |||| ||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 976  ggttgacaccacgagctggtcattccacagtttctttgggcaagaacttgtttgtttt 1033