Miyakogusa Predicted Gene
- Lj0g3v0211059.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0211059.1 tr|G7KKI6|G7KKI6_MEDTR Pentatricopeptide
repeat-containing protein OS=Medicago truncatula
GN=MTR_6g0,27.89,2e-17,PPR_2,Pentatricopeptide repeat;
PPR_1,Pentatricopeptide repeat; PPR,Pentatricopeptide repeat;
SUBFAM,CUFF.13556.1
(1372 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC77080 weakly similar to UniRef100_A7QVP2 Cluster: Chr... 1707 0.0
gnl|LJGI|GO016530 264 1e-69
gnl|LJGI|GO037297 weakly similar to UniRef100_A7Q622 Cluster: Ch... 86 7e-16
gnl|LJGI|FS333759 weakly similar to UniRef100_A7Q622 Cluster: Ch... 82 1e-14
gnl|LJGI|FS342564 weakly similar to UniRef100_A7Q622 Cluster: Ch... 80 4e-14
gnl|LJGI|FS336741 weakly similar to UniRef100_A7QVP2 Cluster: Ch... 66 6e-10
gnl|LJGI|FS341384 weakly similar to UniRef100_A7Q622 Cluster: Ch... 64 2e-09
>gnl|LJGI|TC77080 weakly similar to UniRef100_A7QVP2 Cluster: Chromosome chr14
scaffold_190, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_190, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (19%)
Length = 898
Score = 1707 bits (861), Expect = 0.0
Identities = 878/881 (99%), Gaps = 2/881 (0%)
Strand = Plus / Plus
Query: 84 cgaagctgtaaacgccgtttcctcattccataacatgctcagtatgcgccctgcccctcc 143
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 cgaagctgtaaacgc-gtttcctcattccataacatgctcagtatgcgccctgcccctcc 78
Query: 144 cataacccaatttaacaatattttgggttctcttgtgaggatgaatcattaccccacagc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 cataacccaatttaacaatattttgggttctcttgtgaggatgaatcattaccccacagc 138
Query: 204 tgtttccctttctcaacaattggagctcaaaggaattgcacctgatattgctactttgac 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 tgtttccctttctcaacaattggagctcaaaggaattgcacctgatattgctactttgac 198
Query: 264 catcctgatcaattgtttctgtcacctgggtagaatgaactatgccttctctgtactagg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 catcctgatcaattgtttctgtcacctgggtagaatgaactatgccttctctgtactagg 258
Query: 324 caaaattctcaagagggcttatcagcctgacaccacagccttgactacacttatgaaggg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 caaaattctcaagagggcttatcagcctgacaccacagccttgactacacttatgaaggg 318
Query: 384 tctctgtcttaatggcgagatcaggagcgcaattaactttcatgatgatgtgaaagccaa 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tctctgtcttaatggcgagatcaggagcgcaattaactttcatgatgatgtgaaagccaa 378
Query: 444 gggatttcaatttcaggtagaccgtgttagtgttacttacagattcttgatcaatgagtt 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gggatttcaatttcaggtagaccgtgttagtgttacttacagattcttgatcaatgagtt 438
Query: 504 atgtgaagtaggagaaacaggggctgcgctacagctgttgaggcaaattgaggaggagca 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atgtgaagtaggagaaacaggggctgcgctacagctgttgaggcaaattgaggaggagca 498
Query: 564 tactgatgtacaaatgtacaatacaatcattaaaagcatgtgcgaagataaatgtgtaag 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tactgatgtacaaatgtacaatacaatcattaaaagcatgtgcgaagataaatgtgtaag 558
Query: 624 tgatgcgtatgatttatataatgaaatgcttctcaagagaatttctccagatgttttcac 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgatgcgtatgatttatataatgaaatgcttctcaagagaatttctccagatgttttcac 618
Query: 684 ttacaatactctaatctatggcttttgcgctgggggtcaattgcgaaaagctgttggttt 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttacaatactctaatctatggcttttgcgctgggggtcaattgcgaaaagctgttggttt 678
Query: 744 cttcaatgtgatgaaaatggaaaacatcaaaccagatgtttcaacatgtgatccattgat 803
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 679 cttcaatgtgatgaaaatggaaaacatcaaaccagatgtttcaacatttgatccattgat 738
Query: 804 tcatgccttgtgcaaggaacgaaaggtgaaacaagctaactctgtcgtagctgcaatgat 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tcatgccttgtgcaaggaacgaaaggtgaaacaagctaactctgtcgtagctgcaatgat 798
Query: 864 aaaagcaagtgtggaaccgaatgtctttatttataataccttgatagatggatactgcct 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 aaaagcaagtgtggaaccgaatgtctttatttataataccttgatagatggatactgcct 858
Query: 924 aattaatcaaatgaccaaggcgagatttttgtcccacacta 964
|||||||||||||||||| ||||||||||||||||||||||
Sbjct: 859 aattaatcaaatgaccaa-gcgagatttttgtcccacacta 898
>gnl|LJGI|GO016530
Length = 137
Score = 264 bits (133), Expect = 1e-69
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 1199 cttccaaattagatgctatatgcaatgattataattttgatgacgaaattgaaaaattta 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 cttccaaattagatgctatatgcaatgattataattttgatgacgaaattgaaaaattta 78
Query: 1259 tgcgatataaagagacaggaggagatgcagattttttgatagcttcgcatatagtcttgc 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 tgcgatataaagagacaggaggagatgcagattttttgatagcttcgcatatagtcttgc 18
Query: 1319 gcaatccatcttt 1331
|||||||||||||
Sbjct: 17 gcaatccatcttt 5
>gnl|LJGI|GO037297 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (18%)
Length = 537
Score = 85.7 bits (43), Expect = 7e-16
Identities = 136/167 (81%)
Strand = Plus / Plus
Query: 577 atgtacaatacaatcattaaaagcatgtgcgaagataaatgtgtaagtgatgcgtatgat 636
||||||| ||||||||| | ||| | ||| |||||||| |||||||||||| | |||
Sbjct: 181 atgtacagcacaatcattgatagcctctgcaaagataaacttgtaagtgatgcctgcgat 240
Query: 637 ttatataatgaaatgcttctcaagagaatttctccagatgttttcacttacaatactcta 696
|||||| |||||| | ||||||||||||||||| |||| |||||| |||| |||||
Sbjct: 241 ttatattcggaaatggtactcaagagaatttctcctactgttgtcactttcaatgctcta 300
Query: 697 atctatggcttttgcgctgggggtcaattgcgaaaagctgttggttt 743
|| |||||||||||| || |||||||||| | |||| ||||||||
Sbjct: 301 atttatggcttttgcattgtgggtcaattgaaagaagcagttggttt 347
>gnl|LJGI|FS333759 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (21%)
Length = 766
Score = 81.8 bits (41), Expect = 1e-14
Identities = 110/133 (82%)
Strand = Plus / Plus
Query: 576 aatgtacaatacaatcattaaaagcatgtgcgaagataaatgtgtaagtgatgcgtatga 635
||||||||| || |||||| | ||| ||||| |||||||| ||| |||||||||| | |
Sbjct: 630 aatgtacaacactatcattgatagcttgtgcaaagataaacttgttagtgatgcgtttaa 689
Query: 636 tttatataatgaaatgcttctcaagagaatttctccagatgttttcacttacaatactct 695
||||||| ||||||| || ||||||| ||| || |||||||||||||||||| || |
Sbjct: 690 tttatattctgaaatggttgccaagagagttttacctgatgttttcacttacaatgcttt 749
Query: 696 aatctatggcttt 708
||| |||||||||
Sbjct: 750 aatatatggcttt 762
Score = 52.0 bits (26), Expect = 9e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 178 gtgaggatgaatcattaccccacagctgtttccctttctcaacaattgga 227
|||| |||||| ||||||||||| ||| ||||||||||||| ||| ||||
Sbjct: 238 gtgaagatgaagcattaccccactgctatttccctttctcaccaaatgga 287
>gnl|LJGI|FS342564 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (22%)
Length = 785
Score = 79.8 bits (40), Expect = 4e-14
Identities = 76/88 (86%)
Strand = Plus / Plus
Query: 307 gccttctctgtactaggcaaaattctcaagagggcttatcagcctgacaccacagccttg 366
|||||||||||| | ||||| ||||||||||||| ||||||||| || || | |||||
Sbjct: 395 gccttctctgtattgggcaagattctcaagaggggttatcagccagatactgtaaccttg 454
Query: 367 actacacttatgaagggtctctgtctta 394
|||||||| ||||| |||||||||||||
Sbjct: 455 actacactcatgaaaggtctctgtctta 482
Score = 56.0 bits (28), Expect = 6e-07
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 576 aatgtacaatacaatcattaaaagcatgtgcgaagataaatgtgtaagtgatgcgtatga 635
|||||||||| | |||||| | || ||||| |||||||| ||||| ||||| |||||
Sbjct: 658 aatgtacaattctatcattgactgcttgtgcaaagataaacttgtaaccgatgcctatga 717
Query: 636 tttatataatgaaatgcttctcaagagaatttctccagatgttttcacttacaatactct 695
| || || ||||||| || ||||| |||||| || ||||| |||||||||| | ||||
Sbjct: 718 tctacattctgaaatggttgtcaagggaattttgcctgatgtgttcacttacagttctct 777
Query: 696 aatctatg 703
||||||||
Sbjct: 778 aatctatg 785
>gnl|LJGI|FS336741 weakly similar to UniRef100_A7QVP2 Cluster: Chromosome chr14
scaffold_190, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_190, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (30%)
Length = 760
Score = 65.9 bits (33), Expect = 6e-10
Identities = 117/145 (80%)
Strand = Plus / Plus
Query: 255 tactttgaccatcctgatcaattgtttctgtcacctgggtagaatgaactatgccttctc 314
|||| ||| |||| |||||||||| | ||| ||||| ||| ||| || | ||| || ||
Sbjct: 301 tactatgaacatcttgatcaattgctactgccacctaggtcaaatcaattctgctttttc 360
Query: 315 tgtactaggcaaaattctcaagagggcttatcagcctgacaccacagccttgactacact 374
|||||| | || |||||||||||| | |||||||||||| |||| |||| ||||| ||
Sbjct: 361 tgtactcgccagaattctcaagagtggttatcagcctgataccatcaccttcactactct 420
Query: 375 tatgaagggtctctgtcttaatggc 399
||| || ||||||||||||| ||||
Sbjct: 421 tatcaaaggtctctgtcttagtggc 445
>gnl|LJGI|FS341384 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14
scaffold_54, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr14 scaffold_54, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (20%)
Length = 802
Score = 63.9 bits (32), Expect = 2e-09
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 608 aagataaatgtgtaagtgatgcgtatgatttatataatgaaatgcttctcaagagaattt 667
|||||||| |||||||||||| | |||||||| ||||||| || ||||| |||| |
Sbjct: 595 aagataaacttgtaagtgatgcttgcaatttatattctgaaatgattgtcaagggaatat 654
Query: 668 ctccagatgttttcacttacaatactctaatctatggcttttgc 711
|||| |||||| |||| |||||| || |||| ||||||||||||
Sbjct: 655 ctcctgatgttgtcacgtacaatgctttaatatatggcttttgc 698
Score = 56.0 bits (28), Expect = 6e-07
Identities = 160/204 (78%)
Strand = Plus / Plus
Query: 190 cattaccccacagctgtttccctttctcaacaattggagctcaaaggaattgcacctgat 249
||||||||||| || |||| |||||||| ||| |||| || || |||||||| || |
Sbjct: 183 cattaccccaccgccatttcactttctcaccaaatggaacttaagggaattgcgccaaac 242
Query: 250 attgctactttgaccatcctgatcaattgtttctgtcacctgggtagaatgaactatgcc 309
|||| |||| | | |||| |||||||||||| ||| | || ||| |||| | || |||
Sbjct: 243 attgttactctcagcatcttgatcaattgttactgcaatctaggtcgaatcacctctgca 302
Query: 310 ttctctgtactaggcaaaattctcaagagggcttatcagcctgacaccacagccttgact 369
|| |||||| | | ||| ||||||||||| | || ||||||||| |||| |||| |||
Sbjct: 303 ttttctgtattggccaacattctcaagagaggttttcagcctgataccatcaccttcact 362
Query: 370 acacttatgaagggtctctgtctt 393
|| ||||| || ||||||||||||
Sbjct: 363 actcttatcaaaggtctctgtctt 386