Miyakogusa Predicted Gene

Lj0g3v0208729.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0208729.1 Non Chatacterized Hit- tr|B6TCD4|B6TCD4_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,52.5,2e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; COILIN
P80,Coilin,CUFF.14321.1
         (1800 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC74215 similar to UniRef100_A7P491 Cluster: Chromosome...   293   2e-78

>gnl|LJGI|TC74215 similar to UniRef100_A7P491 Cluster: Chromosome chr1 scaffold_5,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr1 scaffold_5, whole genome shotgun sequence
            - Vitis vinifera (Grape), partial (7%)
          Length = 832

 Score =  293 bits (148), Expect = 2e-78
 Identities = 187/200 (93%), Gaps = 10/200 (5%)
 Strand = Plus / Minus

                                                                        
Query: 1607 aggtagagtatacatcccttgctgatgttagaatggtcaagcatgccaactctaattccg 1666
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 785  aggtagagtatacatccct-gctgatgttagaatggtcaagcatgccaactctaattccg 727

                                                                        
Query: 1667 caactgcagttgcttctactgatgctttggtcaatccaccaaaagcaactaacggcagca 1726
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726  caactgcagttgcttctactgatgctttggtcaatccaccaaaagcaactaacggcagca 667

                                                                        
Query: 1727 ctgatgaaaaacctg---------ctaaagaaaatggtggagtaagcgtctgggatgaaa 1777
            |||||||||||| ||          || ||||||||||||||||||||||||||||||||
Sbjct: 666  ctgatgaaaaacatgtggatctctttacagaaaatggtggagtaagcgtctgggatgaaa 607

                                
Query: 1778 ttaacgaggcattaaatgca 1797
            ||||||||||||||||||||
Sbjct: 606  ttaacgaggcattaaatgca 587