Miyakogusa Predicted Gene
- Lj0g3v0208019.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0208019.1 Non Chatacterized Hit- tr|I1JJN0|I1JJN0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.57232
PE,89.12,0,RNA-binding domain, RBD,NULL; CCCH zinc finger,NULL; no
description,Nucleotide-binding, alpha-beta p,CUFF.13341.1
(1458 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63476 homologue to UniRef100_A7NYL7 Cluster: Chromoso... 1739 0.0
gnl|LJGI|TC73966 homologue to UniRef100_Q2PYX8 Cluster: RRM-cont... 737 0.0
gnl|LJGI|TC74067 similar to UniRef100_Q6Z358 Cluster: RRM-contai... 660 0.0
>gnl|LJGI|TC63476 homologue to UniRef100_A7NYL7 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (63%)
Length = 1012
Score = 1739 bits (877), Expect = 0.0
Identities = 877/877 (100%)
Strand = Plus / Plus
Query: 1 atggcgcataggttgctcagggaccatgaagccgacggttgggaacgctccgacttccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 atggcgcataggttgctcagggaccatgaagccgacggttgggaacgctccgacttccct 195
Query: 61 atcatctgtgaatcatgcctcggcgatagcccttatgttcgaatgacaaaagccgagtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 atcatctgtgaatcatgcctcggcgatagcccttatgttcgaatgacaaaagccgagtat 255
Query: 121 gacaaggagtgcaagatttgtacacggccatttactgtttttagatggagacctggtcgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gacaaggagtgcaagatttgtacacggccatttactgtttttagatggagacctggtcgg 315
Query: 181 gatgcaagatataagaaaactgagatctgccagacatgtagtaaattgaaaaatgtttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gatgcaagatataagaaaactgagatctgccagacatgtagtaaattgaaaaatgtttgt 375
Query: 241 caagtgtgccttctggatcttgaatatggacttccagttcaagtccgggacacagctctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 caagtgtgccttctggatcttgaatatggacttccagttcaagtccgggacacagctctc 435
Query: 301 agtatcgattccaatgatgcaattccaaagagtgatgttaatagggagttttttgctgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 agtatcgattccaatgatgcaattccaaagagtgatgttaatagggagttttttgctgaa 495
Query: 361 gagcatgaccgccgggctagagctggtctagattatgaatcctcttatggtaaagtacgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gagcatgaccgccgggctagagctggtctagattatgaatcctcttatggtaaagtacgt 555
Query: 421 cctaatgatactatactgaagcttcaaaggacaacaccatattacaaaagaaaccgagcg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cctaatgatactatactgaagcttcaaaggacaacaccatattacaaaagaaaccgagcg 615
Query: 481 cacatttgcagtttctacataaggggtgagtgtactaggggagctgagtgtccttataga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cacatttgcagtttctacataaggggtgagtgtactaggggagctgagtgtccttataga 675
Query: 541 catgagatgccggtgactggggagctgtctcaacaaaatatcaaagatcgttactatggg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 catgagatgccggtgactggggagctgtctcaacaaaatatcaaagatcgttactatggg 735
Query: 601 gtgaatgatccagtggctatgaagctacttggcaaggcaggagagatggcaactctggat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gtgaatgatccagtggctatgaagctacttggcaaggcaggagagatggcaactctggat 795
Query: 661 gctcccgaggatgagagcatcaaaactctttatgttggaggacttgatgctagggtcact 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gctcccgaggatgagagcatcaaaactctttatgttggaggacttgatgctagggtcact 855
Query: 721 gagcaggatttgcgggataacttctatgcccatggagaaattgaatccatcaaaatggtt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 gagcaggatttgcgggataacttctatgcccatggagaaattgaatccatcaaaatggtt 915
Query: 781 ctccaacgggcttgtgcttttgtaacctacacaacccgagaaggtgcagaaaaggcagca 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 ctccaacgggcttgtgcttttgtaacctacacaacccgagaaggtgcagaaaaggcagca 975
Query: 841 gaagaactcgccaacaaactggttatcaagggcctga 877
|||||||||||||||||||||||||||||||||||||
Sbjct: 976 gaagaactcgccaacaaactggttatcaagggcctga 1012
>gnl|LJGI|TC73966 homologue to UniRef100_Q2PYX8 Cluster: RRM-containing RNA-binding
protein-like protein; n=1; Solanum tuberosum|Rep:
RRM-containing RNA-binding protein-like protein -
Solanum tuberosum (Potato), partial (25%)
Length = 523
Score = 737 bits (372), Expect = 0.0
Identities = 372/372 (100%)
Strand = Plus / Plus
Query: 1 atggcgcataggttgctcagggaccatgaagccgacggttgggaacgctccgacttccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 atggcgcataggttgctcagggaccatgaagccgacggttgggaacgctccgacttccct 211
Query: 61 atcatctgtgaatcatgcctcggcgatagcccttatgttcgaatgacaaaagccgagtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atcatctgtgaatcatgcctcggcgatagcccttatgttcgaatgacaaaagccgagtat 271
Query: 121 gacaaggagtgcaagatttgtacacggccatttactgtttttagatggagacctggtcgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gacaaggagtgcaagatttgtacacggccatttactgtttttagatggagacctggtcgg 331
Query: 181 gatgcaagatataagaaaactgagatctgccagacatgtagtaaattgaaaaatgtttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gatgcaagatataagaaaactgagatctgccagacatgtagtaaattgaaaaatgtttgt 391
Query: 241 caagtgtgccttctggatcttgaatatggacttccagttcaagtccgggacacagctctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 caagtgtgccttctggatcttgaatatggacttccagttcaagtccgggacacagctctc 451
Query: 301 agtatcgattccaatgatgcaattccaaagagtgatgttaatagggagttttttgctgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 agtatcgattccaatgatgcaattccaaagagtgatgttaatagggagttttttgctgaa 511
Query: 361 gagcatgaccgc 372
||||||||||||
Sbjct: 512 gagcatgaccgc 523
>gnl|LJGI|TC74067 similar to UniRef100_Q6Z358 Cluster: RRM-containing RNA-binding
protein-like; n=1; Oryza sativa Japonica Group|Rep:
RRM-containing RNA-binding protein-like - Oryza sativa
subsp. japonica (Rice), partial (4%)
Length = 569
Score = 660 bits (333), Expect = 0.0
Identities = 342/345 (99%)
Strand = Plus / Plus
Query: 1114 caagacagtcctcctggcggaccttctgggtcaggggagaacaaacccgggccagagaag 1173
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 caagacagtcctcctggcggaccttctggctcaggggagaacaaacccgggccagagaag 60
Query: 1174 cagccaatgcaacattatccccgtccaatgatgccgcctccacctggccaatatcatcat 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cagccaatgcaacattatccccgtccaatgatgccgcctccacctggccaatatcatcat 120
Query: 1234 catcagtattatcctccatatggtggttatatgcaacaaccagttcccccttatcaacag 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 catcagtattatcctccatatggtggttatatgcaacaaccagttcccccttatcaacag 180
Query: 1294 tatccaccacaatacaatgctgtcgtggctccatcccagcctccagctgcaaatcatccc 1353
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tatccaccccaataccatgctgtcgtggctccatcccagcctccagctgcaaatcatccc 240
Query: 1354 tatcagcattctatgcaaccagggtcttcacagacggggtctgcacctgctgggcctgca 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tatcagcattctatgcaaccagggtcttcacagacggggtctgcacctgctgggcctgca 300
Query: 1414 ccagccgaaactggaacatcagcgtcagggtctcagcagcaatga 1458
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccagccgaaactggaacatcagcgtcagggtctcagcagcaatga 345