Miyakogusa Predicted Gene

Lj0g3v0206989.2
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0206989.2 tr|B9IDF9|B9IDF9_POPTR DNA-directed RNA
polymerase (Fragment) OS=Populus trichocarpa
GN=POPTRDRAFT_9,75.51,0,beta and beta-prime subunits of DNA dependent
RNA-polymerase,NULL; seg,NULL; RNA_pol_Rpb2_1,RNA poly,CUFF.13386.2
         (1458 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP075132                                                     168   6e-41
gnl|LJGI|BP041939                                                     147   2e-34

>gnl|LJGI|BP075132 
          Length = 255

 Score =  168 bits (85), Expect = 6e-41
 Identities = 159/176 (90%), Gaps = 7/176 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcctgttatgttgaggagttgtcgttgtgtcttgtatgagaaagatgaagctgagctt 60
           ||||||||||||| ||||||| ||||||||||||| |||||||||||||| |||||||| 
Sbjct: 80  atgcctgttatgtggaggagtagtcgttgtgtcttatatgagaaagatgacgctgagctc 139

                                                                       
Query: 61  gcaaa-acttggtg-agtgccctcttg-atcccggagga--tattttgtgatcaaagg-a 114
           ||| | || ||||| |||||||||| | ||||||| ||   ||||||||||||||||| |
Sbjct: 140 gcagagacgtggtgcagtgccctctcggatcccggcggcagtattttgtgatcaaaggca 199

                                                                   
Query: 115 aatgagaaggtgattttgatacaagagcaactttcaaag-aacagaataattatag 169
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 200 aatgagaaggtgattttgatacaagagcaactttcaaagcaacagaataattatag 255


>gnl|LJGI|BP041939 
          Length = 392

 Score =  147 bits (74), Expect = 2e-34
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                       
Query: 463 aaggtaaaacgttccatgttttcaaacatatcatctgaaaaggaaggaagaggatctcca 522
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aaggtaaaacgttccatgttttcaaacatatcatctgaaaaggaaggaagaggatctcca 378

                         
Query: 523 gccctaaaagtcct 536
           ||||||||||||||
Sbjct: 379 gccctaaaagtcct 392