Miyakogusa Predicted Gene
- Lj0g3v0206979.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0206979.1 CUFF.13380.1
(411 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC67559 similar to UniRef100_A7QMF0 Cluster: DNA-direct... 567 e-161
gnl|LJGI|TC73833 similar to UniRef100_A7QMF0 Cluster: DNA-direct... 476 e-134
gnl|LJGI|BP075578 similar to UniRef100_UPI00005DC295 Cluster: NR... 319 8e-87
gnl|LJGI|CB827138 similar to UniRef100_A2XHT0 Cluster: DNA-direc... 133 9e-31
>gnl|LJGI|TC67559 similar to UniRef100_A7QMF0 Cluster: DNA-directed RNA polymerase;
n=4; core eudicotyledons|Rep: DNA-directed RNA
polymerase - Vitis vinifera (Grape), partial (12%)
Length = 658
Score = 567 bits (286), Expect = e-161
Identities = 286/286 (100%)
Strand = Plus / Plus
Query: 126 aggtctacgaattggagaaatggaacgcgattgcttaattgcgtacggtgctagtatgtt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 aggtctacgaattggagaaatggaacgcgattgcttaattgcgtacggtgctagtatgtt 201
Query: 186 gatttttgagcgactcatgttatctagtgatccttttgaagttcaggtctgtagatcgtg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gatttttgagcgactcatgttatctagtgatccttttgaagttcaggtctgtagatcgtg 261
Query: 246 tgggttgttaggatattacaactataagttgaaaattggtgtttgtccatcatgtaagaa 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgggttgttaggatattacaactataagttgaaaattggtgtttgtccatcatgtaagaa 321
Query: 306 tggagaccagatttctaacatgaagctaccatatgcatgcaaactcttgattcaggaact 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tggagaccagatttctaacatgaagctaccatatgcatgcaaactcttgattcaggaact 381
Query: 366 ccaatcaatgaacattgttccccgcttaaaactggcagatccctga 411
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ccaatcaatgaacattgttccccgcttaaaactggcagatccctga 427
>gnl|LJGI|TC73833 similar to UniRef100_A7QMF0 Cluster: DNA-directed RNA polymerase;
n=4; core eudicotyledons|Rep: DNA-directed RNA
polymerase - Vitis vinifera (Grape), partial (10%)
Length = 570
Score = 476 bits (240), Expect = e-134
Identities = 273/284 (96%)
Strand = Plus / Plus
Query: 126 aggtctacgaattggagaaatggaacgcgattgcttaattgcgtacggtgctagtatgtt 185
|||||||||||||||||||| |||||| |||| |||||||||||| ||||||||||||||
Sbjct: 86 aggtctacgaattggagaaagggaacgtgattccttaattgcgtatggtgctagtatgtt 145
Query: 186 gatttttgagcgactcatgttatctagtgatccttttgaagttcaggtctgtagatcgtg 245
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 gatttttgagcgactcatgctatctagtgatccttttgaagttcaggtctgtagatcgtg 205
Query: 246 tgggttgttaggatattacaactataagttgaaaattggtgtttgtccatcatgtaagaa 305
|||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 206 tgggctgttaggatattacaactatgagttgaaaactggtgtttgtccatcatgtaagaa 265
Query: 306 tggagaccagatttctaacatgaagctaccatatgcatgcaaactcttgattcaggaact 365
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 266 tggagaccagatttctaacatgaagctaccatatgcatgccaactcttgattcaggagct 325
Query: 366 ccaatcaatgaacattgttccccgcttaaaactggcagatccct 409
|| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cccatcaatgaacattgttccccgcttaaaactggcagatccct 369
>gnl|LJGI|BP075578 similar to UniRef100_UPI00005DC295 Cluster: NRPC2 (nuclear RNA
polymerase C 2); DNA binding / DNA-directed RNA
polymerase; n=1; Arabidopsis thaliana|Rep: NRPC2
(nuclear RNA polymerase C 2); DNA binding / DNA-directed
RNA polymerase - Arabidopsis thaliana, partial (5%)
Length = 506
Score = 319 bits (161), Expect = 8e-87
Identities = 176/181 (97%)
Strand = Plus / Minus
Query: 229 caggtctgtagatcgtgtgggttgttaggatattacaactataagttgaaaattggtgtt 288
||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||
Sbjct: 358 caggtctgtagatcgtgtgggctgttaggatattacaactatgagttgaaaactggtgtt 299
Query: 289 tgtccatcatgtaagaatggagaccagatttctaacatgaagctaccatatgcatgcaaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgtccatcatgtaagaatggagaccagatttctaacatgaagctaccatatgcatgcaaa 239
Query: 349 ctcttgattcaggaactccaatcaatgaacattgttccccgcttaaaactggcagatccc 408
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 238 ctcttgattcaggagctccaatccatgaacattgttccccgcttaaaactggcagatccc 179
Query: 409 t 409
|
Sbjct: 178 t 178
>gnl|LJGI|CB827138 similar to UniRef100_A2XHT0 Cluster: DNA-directed RNA polymerase;
n=1; Oryza sativa Indica Group|Rep: DNA-directed RNA
polymerase - Oryza sativa subsp. indica (Rice), partial
(3%)
Length = 260
Score = 133 bits (67), Expect = 9e-31
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 159 cttaattgcgtacggtgctagtatgttgatttttgagcgactcatgttatctagtgatcc 218
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3 cttaattgcgtatggtgctagtatgttgatttttgagcgactcatgctatctagtgatcc 62
Query: 219 ttttgaagttcaggt 233
|||||||||||||||
Sbjct: 63 ttttgaagttcaggt 77