Miyakogusa Predicted Gene

Lj0g3v0206489.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0206489.1 Non Chatacterized Hit- tr|I1K2E2|I1K2E2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.18983 PE,72.73,0,FAMILY
NOT NAMED,NULL; seg,NULL; GRAS,Transcription factor GRAS,CUFF.13211.1
         (1074 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS322623 similar to UniRef100_A7R5W4 Cluster: Chromosom...    88   1e-16
gnl|LJGI|DC599802 similar to UniRef100_A7QAL9 Cluster: Chromosom...    56   5e-07

>gnl|LJGI|FS322623 similar to UniRef100_A7R5W4 Cluster: Chromosome undetermined
           scaffold_1084, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_1084,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (16%)
          Length = 697

 Score = 87.7 bits (44), Expect = 1e-16
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                       
Query: 205 tggatgctgaacgagctgagctccccttatggcgacaccgatcagaagctcgctgcatac 264
           |||| ||| |||||||| ||||||||||| |||||||| || || || ||||| || || 
Sbjct: 601 tggacgctcaacgagctcagctccccttacggcgacactgaacaaaaactcgccgcgtat 660

                                           
Query: 265 ttcctccaagccttgttcagccgcatcaccga 296
           |||||||||||||| |||||||||||||||||
Sbjct: 661 ttcctccaagccttcttcagccgcatcaccga 692


>gnl|LJGI|DC599802 similar to UniRef100_A7QAL9 Cluster: Chromosome chr5 scaffold_72,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr5 scaffold_72, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (14%)
          Length = 571

 Score = 56.0 bits (28), Expect = 5e-07
 Identities = 94/116 (81%)
 Strand = Plus / Plus

                                                                       
Query: 376 ctcaagttccaagaggtcagcccttggacgacgttcggccacgtggcgtccaacggtgcc 435
           |||||||| |||||||| || |||||||| || || || || ||||| || || ||||||
Sbjct: 342 ctcaagtttcaagaggtgagtccttggacaacctttggacatgtggcttcaaatggtgcc 401

                                                                   
Query: 436 atcttggaagccttggaaggcaactccaagctccacatagtggacatcagcaacac 491
            | ||||||||||| |||||| |  ||||  | |||||||| || |||||||||||
Sbjct: 402 cttttggaagccttagaaggcgagaccaaaattcacatagttgatatcagcaacac 457