Miyakogusa Predicted Gene

Lj0g3v0205819.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0205819.1 tr|B9ILT3|B9ILT3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_669375 PE=4
SV=1,34.65,0.00000000000006,seg,NULL; coiled-coil,NULL; SUBFAMILY NOT
NAMED,NULL; GOLGIN-84,NULL,CUFF.13153.1
         (1362 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|GO037125 similar to UniRef100_A7PEI1 Cluster: Chromosom...   202   4e-51
gnl|LJGI|FS326635 similar to UniRef100_A7QU39 Cluster: Chromosom...   103   3e-21

>gnl|LJGI|GO037125 similar to UniRef100_A7PEI1 Cluster: Chromosome chr11 scaffold_13,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr11 scaffold_13, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (11%)
          Length = 225

 Score =  202 bits (102), Expect = 4e-51
 Identities = 102/102 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1231 gagcgtgttgcacataatgctaccaaaatggctgctatggaaagacaagtagaattggag 1290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    gagcgtgttgcacataatgctaccaaaatggctgctatggaaagacaagtagaattggag 60

                                                      
Query: 1291 catagagcagttgagtcatctacagccctcgcaaggatacag 1332
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   catagagcagttgagtcatctacagccctcgcaaggatacag 102


>gnl|LJGI|FS326635 similar to UniRef100_A7QU39 Cluster: Chromosome chr2 scaffold_176,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr2 scaffold_176, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (4%)
          Length = 679

 Score =  103 bits (52), Expect = 3e-21
 Identities = 73/80 (91%)
 Strand = Plus / Plus

                                                                       
Query: 27  agatttattcgaagttgttgatcgaagagccaaactggttgccactgacttagaggacca 86
           |||||||||| ||||||| ||| ||||||||||||||||| |||||||||| ||||||||
Sbjct: 84  agatttattcaaagttgtagattgaagagccaaactggtttccactgacttggaggacca 143

                               
Query: 87  gtctgattctaaatctccag 106
            ||||||||||||| |||||
Sbjct: 144 atctgattctaaatatccag 163