Miyakogusa Predicted Gene

Lj0g3v0205399.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0205399.1 tr|A7Y1Q1|A7Y1Q1_9MAGN NADH dehydrogenase subunit
F (Fragment) OS=Strychnopsis thouarsii GN=ndhF PE=,36.11,0.78,
,CUFF.13116.1
         (256 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC76542                                                      176   4e-44
gnl|LJGI|CB829397                                                     107   3e-23
gnl|LJGI|TC64333 similar to UniRef100_A7PX49 Cluster: Chromosome...   107   3e-23
gnl|LJGI|TC61159 similar to UniRef100_A7PX49 Cluster: Chromosome...    92   2e-18
gnl|LJGI|AU088890                                                      88   3e-17
gnl|LJGI|TC70428                                                       66   1e-10
gnl|LJGI|TC77195                                                       56   1e-07
gnl|LJGI|TC67336                                                       50   7e-06

>gnl|LJGI|TC76542 
          Length = 427

 Score =  176 bits (89), Expect = 4e-44
 Identities = 95/97 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgatttatgacatgataatccacacccaaccagtcctgaagcagaacaattccaggagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atgatttatgacatgataatccacacccaaccagtcctgaagcagaacaattccaggagc 201

                                                
Query: 61  gtttccctcaccattgccaacaagatatccatcaaat 97
           ||| ||||||||||||||||||| |||||||||||||
Sbjct: 200 gttgccctcaccattgccaacaaaatatccatcaaat 164


>gnl|LJGI|CB829397 
          Length = 550

 Score =  107 bits (54), Expect = 3e-23
 Identities = 60/62 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgatttatgacatgataatccacacccaaccagtcctgaagcagaacaattccaggagc 60
           ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 286 atgatttttgacatgataatccacaccaaaccagtcctgaagcagaacaattccaggagc 227

             
Query: 61  gt 62
           ||
Sbjct: 226 gt 225


>gnl|LJGI|TC64333 similar to UniRef100_A7PX49 Cluster: Chromosome chr12 scaffold_36,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr12 scaffold_36, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (33%)
          Length = 893

 Score =  107 bits (54), Expect = 3e-23
 Identities = 60/62 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgatttatgacatgataatccacacccaaccagtcctgaagcagaacaattccaggagc 60
           ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 278 atgatttttgacatgataatccacaccaaaccagtcctgaagcagaacaattccaggagc 219

             
Query: 61  gt 62
           ||
Sbjct: 218 gt 217


>gnl|LJGI|TC61159 similar to UniRef100_A7PX49 Cluster: Chromosome chr12 scaffold_36,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr12 scaffold_36, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (67%)
          Length = 1172

 Score = 91.7 bits (46), Expect = 2e-18
 Identities = 58/62 (93%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgatttatgacatgataatccacacccaaccagtcctgaagcagaacaattccaggagc 60
           ||||||| ||||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct: 343 atgatttttgacatgataatctacacccaaccagtcctgaagcacaataattccaggagc 284

             
Query: 61  gt 62
           ||
Sbjct: 283 gt 282


>gnl|LJGI|AU088890 
          Length = 709

 Score = 87.7 bits (44), Expect = 3e-17
 Identities = 97/115 (84%), Gaps = 6/115 (5%)
 Strand = Plus / Plus

                                                                       
Query: 15  gataatccacacccaaccagtcctgaagcagaacaattccaggagcgtttccctcaccat 74
           |||||||||||||||||||||||||||||| |||||||||||| ||||   |||||    
Sbjct: 259 gataatccacacccaaccagtcctgaagcacaacaattccaggcgcgtcgtcctca---- 314

                                                                  
Query: 75  tgccaacaagatatccatcaaatttctaatcattataaacaacaacataacagaa 129
             ||||||| |||| |||||||| |||||| |||  ||||| |||||||||||||
Sbjct: 315 --ccaacaacatatgcatcaaatgtctaataattgaaaacagcaacataacagaa 367


>gnl|LJGI|TC70428 
          Length = 859

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                        
Query: 16  ataatccacacccaaccagtcctgaagcagaacaattccaggagc 60
           ||||||||||||| |||| |||||||||| |||||||||||||||
Sbjct: 129 ataatccacaccccaccactcctgaagcacaacaattccaggagc 85


>gnl|LJGI|TC77195 
          Length = 697

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 23  acacccaaccagtcctgaagcagaacaattcc 54
           |||||||||||||||||||||| |||||||||
Sbjct: 182 acacccaaccagtcctgaagcacaacaattcc 151


>gnl|LJGI|TC67336 
          Length = 1043

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 20  tccacacccaaccagtcctgaagcagaacaattccaggagc 60
           ||||||||| |||| ||||||| || |||||||||||||||
Sbjct: 202 tccacaccccaccattcctgaaccacaacaattccaggagc 162