Miyakogusa Predicted Gene
- Lj0g3v0204759.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0204759.1 Non Chatacterized Hit- tr|D8R9X3|D8R9X3_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,39.84,1e-18,APO,APO domain; APO_RNA-bind,APO domain;
EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1,NULL,CUFF.13074.1
(394 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC76712 similar to UniRef100_A7QUD4 Cluster: Chromosome... 551 e-156
gnl|LJGI|TC80138 weakly similar to UniRef100_A7QUD4 Cluster: Chr... 309 7e-84
gnl|LJGI|AV768585 weakly similar to UniRef100_A7QUD4 Cluster: Ch... 220 5e-57
gnl|LJGI|FS341784 weakly similar to UniRef100_A7QUD4 Cluster: Ch... 113 8e-25
>gnl|LJGI|TC76712 similar to UniRef100_A7QUD4 Cluster: Chromosome chr11 scaffold_177,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_177, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (24%)
Length = 579
Score = 551 bits (278), Expect = e-156
Identities = 286/289 (98%)
Strand = Plus / Plus
Query: 106 cacagagtacgaaattgtcaagctttcaaacaccagatgagggatgggcagcatgcatgg 165
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 cacagagtacgaaattgtcaagctttcaaacaccagatgagggatggncagcatgcatgg 60
Query: 166 caggaggctacaattaatgatttggtacctcctgtatacgtctaccacattggagatcag 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caggaggctacaattaatgatttggtacctcctgtatacgtctaccacattggagatcag 120
Query: 226 caatccgggaagcctttggtacatgagcttaaaaggtactatggtatgctgcctgcggtg 285
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 121 caatccgggaagcctttggtacatgaacttaaaaggtactatggtatgctgcctgcggtg 180
Query: 286 gttgagctatttgcacaggctggggcgacagttgaaaagaattatgcacattcaatgagg 345
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 181 gttgagctatttgcacaggctggggcgacagctgaaaagaattatgcacattcaatgagg 240
Query: 346 gaagatgttgtcgtccctgaaatggacgaggaaaagttggttgtttaaa 394
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaagatgttgtcgtccctgaaatggacgaggaaaagttggttgtttaaa 289
>gnl|LJGI|TC80138 weakly similar to UniRef100_A7QUD4 Cluster: Chromosome chr11
scaffold_177, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr11 scaffold_177, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (13%)
Length = 468
Score = 309 bits (156), Expect = 7e-84
Identities = 187/196 (95%), Gaps = 1/196 (0%)
Strand = Plus / Plus
Query: 200 tatacgtctaccacattggagatcagcaatccgggaagcctttggtacatgagcttaaaa 259
||||||| |||||| |||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 4 tatacgtttaccaccttggagatcagcaatctgggtagcctttggtacatgagcttaaaa 63
Query: 260 ggtactatggtatgctgcctgcggtggttgagctatttgcacaggctggggcgacagttg 319
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 ggtactacggtatactgcctgcggtggttgagctatttgcacaggctggggcgacagttg 123
Query: 320 aaaagaattatgcacattcaatgagggaagatgttgtcg-tccctgaaatggacgaggaa 378
||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||
Sbjct: 124 aaaagaattatgcacattcaatgagggaagatgttgttgttccctgaaatggatgaggaa 183
Query: 379 aagttggttgtttaaa 394
||||||||||||||||
Sbjct: 184 aagttggttgtttaaa 199
>gnl|LJGI|AV768585 weakly similar to UniRef100_A7QUD4 Cluster: Chromosome chr11
scaffold_177, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr11 scaffold_177, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (13%)
Length = 324
Score = 220 bits (111), Expect = 5e-57
Identities = 144/155 (92%)
Strand = Plus / Minus
Query: 237 gcctttggtacatgagcttaaaaggtactatggtatgctgcctgcggtggttgagctatt 296
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 gcctttggtacatgagcttaaaaggtactatggtatgctgcccccggtggttgagctatt 265
Query: 297 tgcacaggctggggcgacagttgaaaagaattatgcacattcaatgagggaagatgttgt 356
|||||||||||||||||||||| ||||||||||||| | ||| || | |||| |||||||
Sbjct: 264 tgcacaggctggggcgacagtttaaaagaattatgccccttccattaaggaaaatgttgt 205
Query: 357 cgtccctgaaatggacgaggaaaagttggttgttt 391
|||||| |||||||||||||||||||||||||||
Sbjct: 204 tgtccctcaaatggacgaggaaaagttggttgttt 170
>gnl|LJGI|FS341784 weakly similar to UniRef100_A7QUD4 Cluster: Chromosome chr11
scaffold_177, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr11 scaffold_177, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (30%)
Length = 760
Score = 113 bits (57), Expect = 8e-25
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 1 atgaaagcctgggagaaaatgtgcacaggagcttcaaaacttatggacacatatgct 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 atgaaagcctgggagaaaatgtgcacaggagcttcaaaacttatggacacatatgct 760