Miyakogusa Predicted Gene
- Lj0g3v0204699.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0204699.1 tr|Q08151|Q08151_PEA GTP-binding protein OS=Pisum
sativum PE=2 SV=1,90.62,2.94273e-44,Ras,Small GTPase superfamily;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; Rab subfamily of
smal,CUFF.13072.1
(295 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC71887 UniRef100_Q40194 Cluster: Ras-related protein R... 585 e-167
gnl|LJGI|TC57476 UniRef100_Q40195 Cluster: Ras-related protein R... 232 1e-60
gnl|LJGI|FS341189 similar to UniRef100_Q1SL05 Cluster: Ras GTPas... 50 8e-06
>gnl|LJGI|TC71887 UniRef100_Q40194 Cluster: Ras-related protein Rab11D; n=1; Lotus
japonicus|Rep: Ras-related protein Rab11D - Lotus
japonicus, complete
Length = 1340
Score = 585 bits (295), Expect = e-167
Identities = 295/295 (100%)
Strand = Plus / Plus
Query: 1 atgcttattggaaataagtcggatcttcgacaccttgttgctgtcccaacagaagatgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 atgcttattggaaataagtcggatcttcgacaccttgttgctgtcccaacagaagatgga 708
Query: 61 aaatcttttgccgagagggagtcactctacttcatggagacttctgctttggaagcaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 aaatcttttgccgagagggagtcactctacttcatggagacttctgctttggaagcaacc 768
Query: 121 aatgttgaaaatgcattcactgaggttcttactcagatatatcgcatagtgagcaagaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 aatgttgaaaatgcattcactgaggttcttactcagatatatcgcatagtgagcaagaga 828
Query: 181 gcagttgaagctggcgacagtggcagttcctcaggactcccatccaaaggacagacaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 gcagttgaagctggcgacagtggcagttcctcaggactcccatccaaaggacagacaata 888
Query: 241 aacgtgaaagaggattcttcagttttgaagagatttggatgctgctcaacctaga 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 aacgtgaaagaggattcttcagttttgaagagatttggatgctgctcaacctaga 943
>gnl|LJGI|TC57476 UniRef100_Q40195 Cluster: Ras-related protein Rab11E; n=1; Lotus
japonicus|Rep: Ras-related protein Rab11E - Lotus
japonicus, complete
Length = 958
Score = 232 bits (117), Expect = 1e-60
Identities = 246/289 (85%)
Strand = Plus / Plus
Query: 1 atgcttattggaaataagtcggatcttcgacaccttgttgctgtcccaacagaagatgga 60
|||||||| ||||| ||||| ||||||||||| |||||| | ||| | || |||||||||
Sbjct: 433 atgcttatcggaaacaagtcagatcttcgacatcttgttaccgtctccaccgaagatgga 492
Query: 61 aaatcttttgccgagagggagtcactctacttcatggagacttctgctttggaagcaacc 120
||| ||||||| |||| ||||| |||||||||||||| ||||||||| |||||||||||
Sbjct: 493 aaagcttttgcagagaaagagtccctctacttcatggaaacttctgctctggaagcaacc 552
Query: 121 aatgttgaaaatgcattcactgaggttcttactcagatatatcgcatagtgagcaagaga 180
||||| ||||| |||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 553 aatgtcgaaaacgcattctctgaggttcttactcagatataccgcatagtgagcaagaga 612
Query: 181 gcagttgaagctggcgacagtggcagttcctcaggactcccatccaaaggacagacaata 240
|| ||||| ||||| ||||| | ||| | || | | |||||| | ||||||||||||
Sbjct: 613 gcggttgaggctggtgacagggcaagtacttctgttgttccatcccagggacagacaata 672
Query: 241 aacgtgaaagaggattcttcagttttgaagagatttggatgctgctcaa 289
|| ||||| || |||||||| |||||||| |||| ||||||||||||
Sbjct: 673 aatgtgaacgaagattcttctgttttgaatagatacagatgctgctcaa 721
>gnl|LJGI|FS341189 similar to UniRef100_Q1SL05 Cluster: Ras GTPase; Sigma-54 factor,
interaction region; n=1; Medicago truncatula|Rep: Ras
GTPase; Sigma-54 factor, interaction region - Medicago
truncatula (Barrel medic), partial (70%)
Length = 743
Score = 50.1 bits (25), Expect = 8e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 91 ttcatggagacttctgctttggaagcaaccaatgttgaaaatgcattca 139
||||| ||||| |||||| |||| |||||||||||||| || |||||||
Sbjct: 481 ttcatcgagacatctgctctggaggcaaccaatgttgacaaggcattca 529