Miyakogusa Predicted Gene

Lj0g3v0204409.2

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0204409.2 Non Chatacterized Hit- tr|C5XJ90|C5XJ90_SORBI
Putative uncharacterized protein Sb03g046900
OS=Sorghu,51.65,5e-19,REGULATOR OF CHROMOSOME CONDENSATION
(RCC1),NULL; REGULATOR OF CHROMOSOME CONDENSATION,NULL;
seg,NUL,CUFF.13042.2
         (468 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC81682 similar to UniRef100_A7PQZ5 Cluster: Chromosome...   579   e-165
gnl|LJGI|AV422170 homologue to UniRef100_Q84RS0 Cluster: ZR4 pro...   555   e-158

>gnl|LJGI|TC81682 similar to UniRef100_A7PQZ5 Cluster: Chromosome chr6 scaffold_25,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr6 scaffold_25, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (37%)
          Length = 1246

 Score =  579 bits (292), Expect = e-165
 Identities = 424/468 (90%)
 Strand = Plus / Plus

                                                                        
Query: 1    atggaatcattcaaacaagtggaaagcagatcttcaaagaaaaacaagaaattggaattc 60
            |||||||| || || |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 746  atggaatccttgaatcaagtggacagcagatcttcaaagaaaaataagaaattggaattc 805

                                                                        
Query: 61   aacagtagccgtgtctcgcctgttccaaatgggggttcacaatggggagcactgaatatt 120
            |||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||
Sbjct: 806  aacagtagccgtgtctcgcctgttccaaatggaggttcacaatggggagcaaggaatatt 865

                                                                        
Query: 121  tctaaatctttaaatcctgtttttggatcatcaaagaaatttttctcggcttctgttcct 180
            || |||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct: 866  tccaaatcttttaatcctgtttttggatcatcaaagaagtttttttcagcttctgttcct 925

                                                                        
Query: 181  ggatctagaattgtttcccgggcaacatctccaatatctagacggcctagtccgccacgt 240
            ||||||||||||||||||||| ||||||| ||| ||||||||||||||||||| || |||
Sbjct: 926  ggatctagaattgtttcccggtcaacatccccagtatctagacggcctagtccacctcgt 985

                                                                        
Query: 241  tcaactactccaaccccaacactgggaggtcttacatccccgaaaatagttgtggatgat 300
            |||||||||||||||||||| |||||||| |||||||||||||| || || |||||||||
Sbjct: 986  tcaactactccaaccccaacgctgggaggacttacatccccgaagatggtcgtggatgat 1045

                                                                        
Query: 301  gctaagaggactaatgatagcctcagtcaggaggttattaaattaagacagcaggtggaa 360
            || |||| ||| ||||| ||||||||||| |||||| |||||||||||   |||||||||
Sbjct: 1046 gccaagatgaccaatgacagcctcagtcaagaggttgttaaattaagatcacaggtggaa 1105

                                                                        
Query: 361  agcctgactcggaaagcccaacttcaagaagtcgagttggaaagaacaactaaacagcta 420
            ||| ||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct: 1106 agcttgaatcggaaagcccagcttcaagaaattgagttggaaagaacaactaaacagcta 1165

                                                            
Query: 421  aaagatgcaatagcaattgccggggaagaaactgccaaatgtaaagca 468
            ||||| |||||| ||||||||   ||||| ||||||||||| ||||||
Sbjct: 1166 aaagaagcaatatcaattgccaacgaagagactgccaaatgcaaagca 1213


>gnl|LJGI|AV422170 homologue to UniRef100_Q84RS0 Cluster: ZR4 protein; n=1; Medicago
           sativa|Rep: ZR4 protein - Medicago sativa (Alfalfa),
           partial (34%)
          Length = 306

 Score =  555 bits (280), Expect = e-158
 Identities = 304/308 (98%), Gaps = 3/308 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaatcattcaaacaagtggaaagcagatcttcaaagaaaaacaag-aaattggaattca 61
           ||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 1   ggaatcattcaaaca-gtggaaagc-gatcttcaaagaaaaacaagcaaattggaattca 58

                                                                       
Query: 62  acagtagccgtgtctcgcctgttccaaatgggggttcacaatggggagcactgaatattt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  acagtagccgtgtctcgcctgttccaaatgggggttcacaatggggagcactgaatattt 118

                                                                       
Query: 122 ctaaatctttaaatcctgtttttggatcatcaaagaaatttttctcggcttctgttcctg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 ctaaatctttaaatcctgtttttggatcatcaaagaaatttttctcggcttctgttcctg 178

                                                                       
Query: 182 gatctagaattgtttcccgggcaacatctccaatatctagacggcctagtccgccacgtt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 gatctagaattgtttcccgggcaacatctccaatatctagacggcctagtccgccacgtt 238

                                                                       
Query: 242 caactactccaaccccaacactgggaggtcttacatccccgaaaatagttgtggatgatg 301
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 239 caactactccaaccccaacactgggaagtcttacatccccgaaaatagttgtggatgatg 298

                   
Query: 302 ctaagagg 309
           ||||||||
Sbjct: 299 ctaagagg 306