Miyakogusa Predicted Gene

Lj0g3v0202199.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0202199.1 Non Chatacterized Hit- tr|G7ZVK0|G7ZVK0_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,52.88,2e-19,seg,NULL; Frigida,Frigida-like,CUFF.12857.1
         (432 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC63372                                                      151   4e-36
gnl|LJGI|TC66034                                                      141   4e-33
gnl|LJGI|GO024999 UniRef100_Q3LX78 Cluster: Envelope glycoprotei...    54   7e-07

>gnl|LJGI|TC63372 
          Length = 728

 Score =  151 bits (76), Expect = 4e-36
 Identities = 118/132 (89%)
 Strand = Plus / Plus

                                                                       
Query: 248 ttcagaaccttgttaagaagaagctgtatattgaagctgttagattcatttgttcattta 307
           |||||||||||||||||||| |||   |||||||||||||||||||||||||| ||||||
Sbjct: 13  ttcagaaccttgttaagaagcagcaacatattgaagctgttagattcatttgtgcattta 72

                                                                       
Query: 308 aattggcagacaagaatcaaccagttgatctcttgcgaaaatatattcagaatacaaaac 367
           |||| || |||||||||||||| || ||||||||| | ||||| || |||||| ||||||
Sbjct: 73  aattagctgacaagaatcaacctgtcgatctcttgtggaaatacatgcagaatgcaaaac 132

                       
Query: 368 tggtttctgaga 379
           ||||||||||||
Sbjct: 133 tggtttctgaga 144


>gnl|LJGI|TC66034 
          Length = 677

 Score =  141 bits (71), Expect = 4e-33
 Identities = 122/139 (87%)
 Strand = Plus / Plus

                                                                       
Query: 238 tctgattttgttcagaaccttgttaagaagaagctgtatattgaagctgttagattcatt 297
           |||||||||||||||| |||| |||||||| ||  |||| ||||||||||||||||||||
Sbjct: 29  tctgattttgttcagagccttattaagaaggagtagtattttgaagctgttagattcatt 88

                                                                       
Query: 298 tgttcatttaaattggcagacaagaatcaaccagttgatctcttgcgaaaatatattcag 357
           ||| ||||||| |||| ||||||||||||||| |||||||||||||| |||||    |||
Sbjct: 89  tgtgcatttaagttggaagacaagaatcaacctgttgatctcttgcggaaatacgcgcag 148

                              
Query: 358 aatacaaaactggtttctg 376
           ||| |||||||| ||||||
Sbjct: 149 aatgcaaaactgatttctg 167


>gnl|LJGI|GO024999 UniRef100_Q3LX78 Cluster: Envelope glycoprotein; n=1; Human
           immunodeficiency virus 1|Rep: Envelope glycoprotein -
           Human immunodeficiency virus 1, partial (8%)
          Length = 687

 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 87/107 (81%)
 Strand = Plus / Plus

                                                                       
Query: 290 gattcatttgttcatttaaattggcagacaagaatcaaccagttgatctcttgcgaaaat 349
           ||||||||||| ||| |||  |||  ||||| || || ||||||||||| |||||| |||
Sbjct: 2   gattcatttgtgcatataagctggtggacaataaccagccagttgatctattgcgagaat 61

                                                          
Query: 350 atattcagaatacaaaactggtttctgagagaagctgcaggaacacc 396
           |  | |||||| |||||||| |||||||||  || |||| |||||||
Sbjct: 62  acgtgcagaatgcaaaactgatttctgagatcagttgcaagaacacc 108