Miyakogusa Predicted Gene

Lj0g3v0201789.2
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0201789.2 Non Chatacterized Hit- tr|E1ZNJ1|E1ZNJ1_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,33.15,9e-19,GCN4-COMPLEMENTING PROTEIN,NULL;
CENTAURIN/ARF,NULL; PH_DOMAIN,Pleckstrin homology domain; BAR/IMD
d,CUFF.12833.2
         (945 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV407068 similar to UniRef100_Q0J0G6 Cluster: Os09g0510...   369   e-101
gnl|LJGI|TC75031 homologue to UniRef100_A7QT71 Cluster: Chromoso...    56   4e-07

>gnl|LJGI|AV407068 similar to UniRef100_Q0J0G6 Cluster: Os09g0510700 protein; n=1;
           Oryza sativa Japonica Group|Rep: Os09g0510700 protein -
           Oryza sativa subsp. japonica (Rice), partial (7%)
          Length = 186

 Score =  369 bits (186), Expect = e-101
 Identities = 186/186 (100%)
 Strand = Plus / Plus

                                                                       
Query: 467 ataacattgaggtcaagaagagatttgagtttttagaggttgttgctggaattatggatg 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ataacattgaggtcaagaagagatttgagtttttagaggttgttgctggaattatggatg 60

                                                                       
Query: 527 ctcatcttcgatactttcaacagggatatcatctattaactcagatgggacctttcatta 586
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctcatcttcgatactttcaacagggatatcatctattaactcagatgggacctttcatta 120

                                                                       
Query: 587 acgaggtattggattttgtacaccagtcaagagaaagatacgatacagagcagatttcac 646
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acgaggtattggattttgtacaccagtcaagagaaagatacgatacagagcagatttcac 180

                 
Query: 647 tttata 652
           ||||||
Sbjct: 181 tttata 186


>gnl|LJGI|TC75031 homologue to UniRef100_A7QT71 Cluster: Chromosome chr1
           scaffold_166, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr1 scaffold_166, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (19%)
          Length = 707

 Score = 56.0 bits (28), Expect = 4e-07
 Identities = 73/88 (82%)
 Strand = Plus / Plus

                                                                       
Query: 98  tttacaaaggatgtcgaaagtatacggaagggcttggagactcatatcatggggacattg 157
           |||||||||||||| |||| || || ||||| ||||| ||  ||||| |||| || ||||
Sbjct: 332 tttacaaaggatgtagaaaatacactgaaggacttggggaggcatatgatggagatattg 391

                                       
Query: 158 catttgcaactacccttgaaaattttgg 185
           ||||||||| | |||| |||| ||||||
Sbjct: 392 catttgcaagttccctagaaacttttgg 419



 Score = 52.0 bits (26), Expect = 6e-06
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcatttcgcaaatctcgatgacactcccatgttccgccaacagctccagtgcttggag 60
           ||||| ||||| || ||||||||| |||| ||||||||| | ||| | || ||| |||||
Sbjct: 235 atgcaattcgccaagctcgatgactctcctatgttccgcaagcagatacaatgcatggag 294

                         
Query: 61  gaaagtgcagaatc 74
           |||||||| |||||
Sbjct: 295 gaaagtgctgaatc 308