Miyakogusa Predicted Gene
- Lj0g3v0201699.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0201699.1 CUFF.12820.1
(534 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59017 similar to UniRef100_A7PV07 Cluster: Chromosome... 731 0.0
gnl|LJGI|TC64307 similar to UniRef100_Q42698 Cluster: Geranylger... 176 9e-44
gnl|LJGI|TC75443 similar to UniRef100_A7PV07 Cluster: Chromosome... 149 2e-35
>gnl|LJGI|TC59017 similar to UniRef100_A7PV07 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (30%)
Length = 785
Score = 731 bits (369), Expect = 0.0
Identities = 378/381 (99%)
Strand = Plus / Minus
Query: 154 gacgagcgcggaggcggcgaggcagagacccggcctgactctcttcccgccggcgaggag 213
||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 646 gacgagctcgcaggcggcgaggcagagaaccggcctgactctcttcccgccggcgaggag 587
Query: 214 cgagtaccgcatcgcttcatggatcttgacagggtcccggagcgaaacggcgtcgtcgag 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 cgagtaccgcatcgcttcatggatcttgacagggtcccggagcgaaacggcgtcgtcgag 527
Query: 274 ggcctggttaacctgggtggctttctgaatcatgtaggacttgaaattgaaagtgggttt 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ggcctggttaacctgggtggctttctgaatcatgtaggacttgaaattgaaagtgggttt 467
Query: 334 ctcttcctcagcctccagcgtctcctccttggtcagcaccgcggaaaccgtggaagaaga 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ctcttcctcagcctccagcgtctcctccttggtcagcaccgcggaaaccgtggaagaaga 407
Query: 394 agaaagctgttgcctctgcggctttgcagggataatcggcgaaatgggtatcttcctaag 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 agaaagctgttgcctctgcggctttgcagggataatcggcgaaatgggtatcttcctaag 347
Query: 454 gccatggtagaggtagaatgtttgggatctggatctggtggcatggttgaagacgaaact 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gccatggtagaggtagaatgtttgggatctggatctggtggcatggttgaagacgaaact 287
Query: 514 tgggcgtgcccatgtgttgag 534
|||||||||||||||||||||
Sbjct: 286 tgggcgtgcccatgtgttgag 266
Score = 167 bits (84), Expect = 9e-41
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 57 cgaaaaccttatggttcgtcggcttccctcgccggagatcgtcgttgtccatacaaggga 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 cgaaaaccttatggttcgtcggcttccctcgccggagatcgtcgttgtccatacaaggga 726
Query: 117 ggtcatcgtgaatgagcgacatgg 140
||||||||||||||||||||||||
Sbjct: 725 ggtcatcgtgaatgagcgacatgg 702
>gnl|LJGI|TC64307 similar to UniRef100_Q42698 Cluster: Geranylgeranyl pyrophosphate
synthetase, chloroplast precursor (GGPP synthetase)
(GGPS) [Includes: Dimethylallyltranstransferase ;
Geranyltranstransferase ; Farnesyltranstransferase ];
n=1; Catharanthus roseus|Rep: Geranylgeranyl
pyrophosphate synthetase, chloroplast precursor (GGPP
synthetase) (GGPS) [Includes:
Dimethylallyltranstransferase ; Geranyltranstransferase
; Farnesyltranstransferase ] - Catharanthus roseus
(Rosy periwinkle) (Madagascar periwinkle), partial
(56%)
Length = 752
Score = 176 bits (89), Expect = 9e-44
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 1 atgctcgaaggcgaaggcgagaagcgcgtcgccggcgaggaccgccacgtcctccccgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 atgctcgaaggcgaaggcgagaagcgcgtcgccggcgaggaccgccacgtcctccccgaa 30
Query: 61 aaccttatggttcgtcggcttccctcgcc 89
|||||||||||||||||||||||||||||
Sbjct: 29 aaccttatggttcgtcggcttccctcgcc 1
>gnl|LJGI|TC75443 similar to UniRef100_A7PV07 Cluster: Chromosome chr4 scaffold_32,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr4 scaffold_32, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (50%)
Length = 819
Score = 149 bits (75), Expect = 2e-35
Identities = 123/139 (88%)
Strand = Plus / Minus
Query: 2 tgctcgaaggcgaaggcgagaagcgcgtcgccggcgaggaccgccacgtcctccccgaaa 61
|||||||||||||||||||| |||||||||||||||||||| || | || ||| |||||
Sbjct: 623 tgctcgaaggcgaaggcgaggagcgcgtcgccggcgaggactgcgaagttctcgccgaag 564
Query: 62 accttatggttcgtcggcttccctcgccggagatcgtcgttgtccatacaagggaggtca 121
|||| ||||| || ||| |||||||||||||||||||||||||||| || |||||||||
Sbjct: 563 gccttgtggttggtgggcctccctcgccggagatcgtcgttgtccatgcaggggaggtca 504
Query: 122 tcgtgaatgagcgacatgg 140
||||| ||||| |||||||
Sbjct: 503 tcgtggatgagtgacatgg 485
Score = 54.0 bits (27), Expect = 9e-07
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 154 gacgagcgcggaggcggcgaggcagagacccggcctgactctcttcccgccggcgaggag 213
||||||| || ||||||||| ||| || |||||| ||| | ||| ||||||||||||||
Sbjct: 429 gacgagctcgcaggcggcgatgcatagcaccggccggacgcgcttgccgccggcgaggag 370
Query: 214 cgagtaccgcatcgcttcatggatctt 240
||||| ||||| |||| ||||||||
Sbjct: 369 ggagtatcgcatggcttggtggatctt 343