Miyakogusa Predicted Gene

Lj0g3v0199579.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0199579.1 tr|B9N789|B9N789_POPTR Cl-channel clc-7
OS=Populus trichocarpa GN=POPTRDRAFT_811492 PE=4
SV=1,81.29,0,Voltage_CLC,Chloride channel, voltage gated;
CBS,Cystathionine beta-synthase, core; seg,NULL; Clc
ch,gene.g15404.t1.1
         (2199 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC72370 similar to UniRef100_A7QR06 Cluster: Chromosome...    78   3e-13
gnl|LJGI|GO005971 similar to UniRef100_P93567 Cluster: Chloride ...    66   1e-09

>gnl|LJGI|TC72370 similar to UniRef100_A7QR06 Cluster: Chromosome undetermined
            scaffold_147, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome undetermined scaffold_147, whole
            genome shotgun sequence - Vitis vinifera (Grape), partial
            (31%)
          Length = 1146

 Score = 77.8 bits (39), Expect = 3e-13
 Identities = 159/199 (79%)
 Strand = Plus / Plus

                                                                        
Query: 1973 tggaaatgtatgttgatctccatcccattactaacaggtcaccatatacagttgttgaaa 2032
            |||| |||||||||||||||||||| ||||||||    || ||| | || || ||||| |
Sbjct: 522  tggatatgtatgttgatctccatccaattactaattcatccccacacactgtagttgaga 581

                                                                        
Query: 2033 caatgtctctagctaaagctgctcttcttttccgcgaccttgccctcaggcacttgttag 2092
            ||||||| ||||| ||||||||  || |||||||| | |  |  ||||||||| |||  |
Sbjct: 582  caatgtcactagccaaagctgccattattttccgccaacaaggactcaggcacatgtgtg 641

                                                                        
Query: 2093 tggttccaaagacaccaggaaggcctccgattgtggggatcctaacaaggcacgatttca 2152
            | | ||||||||  | ||| || |||||  |||| ||||| |||||| | || |||||||
Sbjct: 642  ttgctccaaagagccaagggagacctccagttgttgggattctaacacgccatgatttca 701

                               
Query: 2153 tgcctgagcatgttttggg 2171
            |||||||||||||||||||
Sbjct: 702  tgcctgagcatgttttggg 720



 Score = 58.0 bits (29), Expect = 2e-07
 Identities = 122/153 (79%)
 Strand = Plus / Plus

                                                                        
Query: 1553 ctgtggctgattgttttaacaaaggtgtttatgatcagattgtggaaatgaaggggttgc 1612
            ||||||||||||| || ||||| || || || ||||| ||| || | || || ||| | |
Sbjct: 102  ctgtggctgattgcttcaacaagggcgtctacgatcaaattctgaagatcaaagggcttc 161

                                                                        
Query: 1613 cttatatggaagcacatgcagaaccatatctgaggcaactagttgcaagtgatgttgttt 1672
            ||||| |||| || ||||||||||| ||| ||||| |  | |||||| |||||||||| |
Sbjct: 162  cttatttggaggctcatgcagaaccttatatgaggaatattgttgcacgtgatgttgtct 221

                                             
Query: 1673 caggtcccttgtttacattttctgggattgaaa 1705
            | ||||| ||| | || |||||||| |||||||
Sbjct: 222  cgggtccattgatgaccttttctggcattgaaa 254



 Score = 56.0 bits (28), Expect = 1e-06
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                
Query: 1452 caccatgagaatgactgtttcactttgtgtcatacttcttgaacttactaat 1503
            ||||||||||||||| || ||||||||||| ||||| ||||| || ||||||
Sbjct: 1    caccatgagaatgacagtctcactttgtgttatactacttgagctcactaat 52


>gnl|LJGI|GO005971 similar to UniRef100_P93567 Cluster: Chloride channel Stclc1; n=1;
           Solanum tuberosum|Rep: Chloride channel Stclc1 - Solanum
           tuberosum (Potato), partial (5%)
          Length = 563

 Score = 65.9 bits (33), Expect = 1e-09
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                            
Query: 710 ggtggaggagtgctcttctttggcgaacatttttcactacagctgtggt 758
           |||||||||||||||| |||||| | ||||||||||||||||| |||||
Sbjct: 336 ggtggaggagtgctctactttggaggacatttttcactacagcagtggt 384