Miyakogusa Predicted Gene
- Lj0g3v0199519.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0199519.1 tr|G7L1E8|G7L1E8_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_7g075800 PE=4 SV=1,27.11,2e-18,F-box domain,F-box
domain, cyclin-like; RNI-like,NULL; FAMILY NOT NAMED,NULL; A Receptor
for Ubiquit,NODE_65170_length_1218_cov_8.077176.path1.1
(1116 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BP045368 153 3e-36
gnl|LJGI|AV775007 119 4e-26
gnl|LJGI|TC64591 weakly similar to UniRef100_Q2HUI7 Cluster: Cyc... 78 1e-13
gnl|LJGI|TC69530 76 5e-13
gnl|LJGI|FS330951 similar to UniRef100_A7QK65 Cluster: Chromosom... 74 2e-12
gnl|LJGI|DC599791 weakly similar to UniRef100_A7QK65 Cluster: Ch... 70 3e-11
gnl|LJGI|TC69553 weakly similar to UniRef100_Q8L7H1 Cluster: F-b... 64 2e-09
gnl|LJGI|FS343807 62 8e-09
gnl|LJGI|FS329231 similar to UniRef100_A2Q1U7 Cluster: Cyclin-li... 56 5e-07
gnl|LJGI|BP083641 UniRef100_A3N1N8 Cluster: Maltose transport sy... 56 5e-07
gnl|LJGI|TC61348 similar to UniRef100_A7QK65 Cluster: Chromosome... 56 5e-07
gnl|LJGI|TC82244 54 2e-06
>gnl|LJGI|BP045368
Length = 290
Score = 153 bits (77), Expect = 3e-36
Identities = 142/164 (86%)
Strand = Plus / Minus
Query: 953 agatgaggtttgccaagtttgttatgcaaaattcagcattgttacataccatgacaattt 1012
||||||| ||||| || ||||||||| ||||||| |||||||||||||||||| |||||
Sbjct: 274 agatgagatttgctgagcttgttatgcnaaattcaacattgttacataccatgaaaattt 215
Query: 1013 ccagtcaccctgaactagatcataagaaaattcttgaaatgagaaaagaattggactcat 1072
|||| ||||| ||| |||| |||||||||||||||||| |||||||||||||||||
Sbjct: 214 tcagtaaccctttcctatctcatgagaaaattcttgaaatgaaaaaagaattggactcat 155
Query: 1073 gcccaaggagctctgcatcctgtgaacttttatttaagtaattt 1116
|| || |||||||| |||||||||| ||||||||| |||||||
Sbjct: 154 gcacatggagctctatatcctgtgaaattttatttatgtaattt 111
>gnl|LJGI|AV775007
Length = 469
Score = 119 bits (60), Expect = 4e-26
Identities = 164/196 (83%), Gaps = 2/196 (1%)
Strand = Plus / Minus
Query: 421 tttaagggtttttctgatgttgaacttccctcactcaaagctctgcatttgtacatggtt 480
||||||| ||||||| |||||||||||||||||||| ||||||||||||| || |||
Sbjct: 443 tttaaggatttttctagtgttgaacttccctcactcacagctctgcatttgaacggtgtt 384
Query: 481 catttttccaagcctcaacatttaa-tggagcttcttattagttttccaaatcttgaaaa 539
|||||| ||| |||||||||||| |||||||||||| | | | ||| ||||||||||
Sbjct: 383 tattttttcaatgctcaacatttaactggagcttcttaatgggtgtcccaatcttgaaat 324
Query: 540 c-ttagaagcaaaccatatatggttttattttcatgacccttcatttaagggtaagggga 598
| || |||||| | || ||| | ||| ||| | ||||||||||| ||||||||||||||
Sbjct: 323 ctttggaagcacatcagataagttttgattatattgacccttcatctaagggtaagggga 264
Query: 599 accttaaacctttatc 614
| ||||||||||||||
Sbjct: 263 agcttaaacctttatc 248
>gnl|LJGI|TC64591 weakly similar to UniRef100_Q2HUI7 Cluster: Cyclin-like F-box; FBD;
Zinc finger, FYVE/PHD-type; n=1; Medicago truncatula|Rep:
Cyclin-like F-box; FBD; Zinc finger, FYVE/PHD-type -
Medicago truncatula (Barrel medic), partial (19%)
Length = 1534
Score = 77.8 bits (39), Expect = 1e-13
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 1049 aaatgagaaaagaattggactcatgcccaaggagctctgcatcctgtgaacttttattta 1108
|||||| |||||| |||| ||||| ||||||||||||| || |||||||||||||||||
Sbjct: 1303 aaatgataaaagagttggcctcatacccaaggagctcttcaatctgtgaacttttattta 1362
Query: 1109 agtaatt 1115
|||||||
Sbjct: 1363 agtaatt 1369
Score = 56.0 bits (28), Expect = 5e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 793 cttgatatgctcaatcattgccctcaacttcaaacttttgtccttgaa 840
||||||||||||||||| |||||| | ||||| ||||||||| |||||
Sbjct: 1056 cttgatatgctcaatcactgccctaagcttcagacttttgtctttgaa 1103
>gnl|LJGI|TC69530
Length = 553
Score = 75.8 bits (38), Expect = 5e-13
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 1051 atgagaaaagaattggactcatgcccaaggagctctgcatcctgtgaacttttatttaag 1110
||||||| |||||| |||||||||||||||||||||||| |||| |||| ||||||| |
Sbjct: 413 atgagaatagaattagactcatgcccaaggagctctgcaaactgtcaactcttatttatg 472
Query: 1111 taattt 1116
||||||
Sbjct: 473 taattt 478
Score = 58.0 bits (29), Expect = 1e-07
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 720 agacattcctatatttcctaatttaattcatctggatctca 760
|||||||||||||||||| |||||||||||| |||| ||||
Sbjct: 85 agacattcctatatttcccaatttaattcatatggagctca 125
>gnl|LJGI|FS330951 similar to UniRef100_A7QK65 Cluster: Chromosome chr19
scaffold_111, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr19 scaffold_111, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (18%)
Length = 812
Score = 73.8 bits (37), Expect = 2e-12
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 3 ggttgataggattagcaatttaccagatgaacttctgtttcacattctctcgttccttcc 62
|||||||||||||||||| || ||||||||| |||| | |||||||||||| || |||||
Sbjct: 2 ggttgataggattagcaagttgccagatgaagttctctgtcacattctctcatttcttcc 61
Query: 63 aactgaaga 71
||||||||
Sbjct: 62 cactgaaga 70
>gnl|LJGI|DC599791 weakly similar to UniRef100_A7QK65 Cluster: Chromosome chr19
scaffold_111, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr19 scaffold_111, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (17%)
Length = 553
Score = 69.9 bits (35), Expect = 3e-11
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 1 atggttgataggattagcaatttaccagatgaacttctgtttcacattctctcgttcctt 60
|||||||| ||||||||||| |||||||||||| |||||| |||||| || || || ||
Sbjct: 153 atggttgacaggattagcaagttaccagatgaagttctgtgtcacatcctttcatttctc 212
Query: 61 ccaactgaaga 71
|||||||||||
Sbjct: 213 ccaactgaaga 223
>gnl|LJGI|TC69553 weakly similar to UniRef100_Q8L7H1 Cluster: F-box/LRR-repeat protein
At4g14103; n=1; Arabidopsis thaliana|Rep:
F-box/LRR-repeat protein At4g14103 - Arabidopsis thaliana
(Mouse-ear cress), partial (13%)
Length = 1557
Score = 63.9 bits (32), Expect = 2e-09
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 1045 cttgaaatgagaaaagaattggactcatgcccaaggagctctgcatcctgtgaactttta 1104
|||||||||| || |||||||| ||||| ||||||||||||||| ||||||||| ||
Sbjct: 1285 cttgaaatgataacagaattggcctcatatccaaggagctctgcagtttgtgaacttcta 1344
Query: 1105 tttaagtaattt 1116
||||||| ||||
Sbjct: 1345 tttaagtgattt 1356
>gnl|LJGI|FS343807
Length = 619
Score = 61.9 bits (31), Expect = 8e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 793 cttgatatgctcaatcattgccctcaacttcaaacttttgtccttga 839
|||||||||||||||||||||||| | ||||||||| ||||| ||||
Sbjct: 121 cttgatatgctcaatcattgccctaagcttcaaactgttgtctttga 167
Score = 56.0 bits (28), Expect = 5e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 1068 ctcatgcccaaggagctctgcatcctgtgaacttttatttaagtaatt 1115
||||| |||||||||||||||| |||||||||||| ||||||||||
Sbjct: 396 ctcatacccaaggagctctgcagtttgtgaacttttaattaagtaatt 443
>gnl|LJGI|FS329231 similar to UniRef100_A2Q1U7 Cluster: Cyclin-like F-box; FBD; n=1;
Medicago truncatula|Rep: Cyclin-like F-box; FBD -
Medicago truncatula (Barrel medic), partial (16%)
Length = 767
Score = 56.0 bits (28), Expect = 5e-07
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 3 ggttgataggattagcaatttaccagatgaacttctgtttcacattctctcgttccttcc 62
|||||| |||||||||| || ||||||||||| || | |||||||||||| || |||||
Sbjct: 308 ggttgacaggattagcatgttgccagatgaactcctttgtcacattctctcctttcttcc 367
Query: 63 aact 66
||||
Sbjct: 368 aact 371
>gnl|LJGI|BP083641 UniRef100_A3N1N8 Cluster: Maltose transport system permease protein
MalF; n=1; Actinobacillus pleuropneumoniae L20|, partial
(2%)
Length = 336
Score = 56.0 bits (28), Expect = 5e-07
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 1046 ttgaaatgagaaaagaattggactcatgcccaaggagctctgcatcctgtgaacttttat 1105
|||||||| |||||||||| |||||||||||| || |||||| |||||||||||||
Sbjct: 298 ttgaaatgctaaaagaattgtcctcatgcccaagaagttctgcaatatgtgaacttttat 239
Query: 1106 ttaa 1109
||||
Sbjct: 238 ttaa 235
>gnl|LJGI|TC61348 similar to UniRef100_A7QK65 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (18%)
Length = 1489
Score = 56.0 bits (28), Expect = 5e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 384 caaaacccttgttgttctcaagttgaga 411
||||||||||||||||||||||||||||
Sbjct: 559 caaaacccttgttgttctcaagttgaga 586
>gnl|LJGI|TC82244
Length = 527
Score = 54.0 bits (27), Expect = 2e-06
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 1069 tcatgcccaaggagctctgcatcctgtgaacttttatttaagtaatt 1115
|||| |||||||||||||||| ||||||||||||||| |||||||
Sbjct: 297 tcatacccaaggagctctgcaatttgtgaacttttatttgagtaatt 343