Miyakogusa Predicted Gene

Lj0g3v0198759.3
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0198759.3 Non Chatacterized Hit- tr|Q2RAU3|Q2RAU3_ORYSJ
Transcription initiation factor IIE, putative
OS=Oryza,56.76,6e-19,HTH_TFE_IIE,Transcription factor TFE/TFIIEalpha
HTH domain; coiled-coil,NULL; no description,Winged ,CUFF.12595.3
         (621 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC80033 weakly similar to UniRef100_A9S7R4 Cluster: Pre...   553   e-157

>gnl|LJGI|TC80033 weakly similar to UniRef100_A9S7R4 Cluster: Predicted protein; n=1;
           Physcomitrella patens subsp. patens|Rep: Predicted
           protein - Physcomitrella patens subsp. patens, partial
           (25%)
          Length = 953

 Score =  553 bits (279), Expect = e-157
 Identities = 336/355 (94%)
 Strand = Plus / Plus

                                                                       
Query: 263 agacagcaaaaggtgcaaaaatttatagtgctgctgtagctgctaatgctgatggtcaac 322
           |||||||||||||||||||||||||||||||||||||||||||||  |||||  ||||||
Sbjct: 269 agacagcaaaaggtgcaaaaatttatagtgctgctgtagctgctacagctgacagtcaac 328

                                                                       
Query: 323 acacaggaaaagagggagaagaaaaggtcaagctgcacacacattcttactgctgtttag 382
           | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 329 agacaggaaaagagggagaagaaaaggtcaaactgcacacacactcttactgctgtttag 388

                                                                       
Query: 383 attatgcacagatatatgatgtgactaggtacagactgcatcgcatgaagcataagctta 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 389 attatgcacagatatatgatgtgactaggtacagactgcatcgcatgaagcataaactga 448

                                                                       
Query: 443 aagatgaattggagaacaaaaatacacttcaggagtatatatgtccgaactgtgggaaaa 502
           ||||||||||||| ||||||||||||||||||||||| |||||||| |||||||  ||||
Sbjct: 449 aagatgaattggataacaaaaatacacttcaggagtacatatgtccaaactgtgcaaaaa 508

                                                                       
Query: 503 gatacaatgctttggatgccctgcggttaatatcttttgaagatgaggacttccattgtg 562
           ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||
Sbjct: 509 gatacaatgctttggatgcactgcggttaatatctttcgaagatgaggacttccatcgtg 568

                                                                  
Query: 563 aaagttgcaatggaaaactagaggttgaaagtgataaaatagctgctcaagaagg 617
           ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aaagttgtaatgggaaactagaggttgaaagtgataaaatagctgctcaagaagg 623



 Score =  170 bits (86), Expect = 7e-42
 Identities = 122/134 (91%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgattgagccctataacaagctggttaaactagcggcgagggctttctatgatgatctt 60
           |||||||| || || |||||| ||||||||||||| || |||||||||||||||||||||
Sbjct: 128 atgattgaaccttacaacaagttggttaaactagcagcaagggctttctatgatgatctt 187

                                                                       
Query: 61  accagcaaaggagataatcagcccaaatcgggaaggagtgataacagaggaattgctgtt 120
           |||||||||||||||||||| || ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 188 accagcaaaggagataatcaaccaaaatcaggaagaagtgataacagaggaatagctgtt 247

                         
Query: 121 gtggttcttgatgc 134
           || |||||||||||
Sbjct: 248 gtcgttcttgatgc 261