Miyakogusa Predicted Gene

Lj0g3v0196169.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0196169.1 Non Chatacterized Hit- tr|G3TK03|G3TK03_LOXAF
Uncharacterized protein (Fragment) OS=Loxodonta
africa,37.66,0.87,seg,NULL,CUFF.12409.1
         (667 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP051485                                                     613   e-175
gnl|LJGI|TC68236 homologue to UniRef100_A2Q4V6 Cluster: Ribosoma...    78   8e-14

>gnl|LJGI|BP051485 
          Length = 526

 Score =  613 bits (309), Expect = e-175
 Identities = 309/309 (100%)
 Strand = Plus / Minus

                                                                       
Query: 359 gtggcggtgctagatcggaagcgcgatgggagtgggtcgcgagtgaattgagcccagata 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gtggcggtgctagatcggaagcgcgatgggagtgggtcgcgagtgaattgagcccagata 467

                                                                       
Query: 419 tgaatggaggggttggagaacgggaacaaggtgaagatatgatgaaatctcgagaagctt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tgaatggaggggttggagaacgggaacaaggtgaagatatgatgaaatctcgagaagctt 407

                                                                       
Query: 479 tgtttcgacctgattcgcggtgcgaagaaaagaggctcagagttaagggacctgttaggt 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tgtttcgacctgattcgcggtgcgaagaaaagaggctcagagttaagggacctgttaggt 347

                                                                       
Query: 539 tcttaacatcactaccaggaaatccctgctactggtatggggaacttggtttgatgtgga 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tcttaacatcactaccaggaaatccctgctactggtatggggaacttggtttgatgtgga 287

                                                                       
Query: 599 tatgtatgcttggatggggattaatgagtgtgggtcgcgagacatattgcttggtggcta 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tatgtatgcttggatggggattaatgagtgtgggtcgcgagacatattgcttggtggcta 227

                    
Query: 659 atttgtagc 667
           |||||||||
Sbjct: 226 atttgtagc 218


>gnl|LJGI|TC68236 homologue to UniRef100_A2Q4V6 Cluster: Ribosomal protein S10,
           eukaryotic and archaeal form; n=1; Medicago
           truncatula|Rep: Ribosomal protein S10, eukaryotic and
           archaeal form - Medicago truncatula (Barrel medic),
           complete
          Length = 609

 Score = 77.8 bits (39), Expect = 8e-14
 Identities = 67/75 (89%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                       
Query: 464 aatctcgagaagctttgtttcgacctgattcgcggtgcgaa-gaaaagaggctcagagtt 522
           |||||||||||| |||||| |||||||||||| |||||||| || ||||| ||||| |||
Sbjct: 156 aatctcgagaaggtttgttccgacctgattcgtggtgcgaaggataagagactcagggtt 215

                          
Query: 523 aagggacctgttagg 537
           |||||||| ||||||
Sbjct: 216 aagggaccagttagg 230