Miyakogusa Predicted Gene

Lj0g3v0194229.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0194229.1 tr|Q6ZGL7|Q6ZGL7_ORYSJ Glutamate receptor
OS=Oryza sativa subsp. japonica GN=OJ1442_E05.29 PE=3
SV=1,59.49,4e-19,GLUTAMATE RECEPTOR 3 PLANT,NULL; IONOTROPIC GLUTAMATE
RECEPTOR,NULL,CUFF.12281.1
         (272 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC75875 similar to UniRef100_Q93YT1 Cluster: Glutamate ...   525   e-149

>gnl|LJGI|TC75875 similar to UniRef100_Q93YT1 Cluster: Glutamate receptor 3.2
           precursor; n=1; Arabidopsis thaliana|Rep: Glutamate
           receptor 3.2 precursor - Arabidopsis thaliana (Mouse-ear
           cress), partial (16%)
          Length = 897

 Score =  525 bits (265), Expect = e-149
 Identities = 272/273 (99%), Gaps = 1/273 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtcaactgccattctgagtctatctgagaatggtgaacttaggaggatccgtga-aaa 59
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 294 atgtcaactgccattctgagtctatctgagaatggtgaacttaggaggatccgtgacaaa 353

                                                                       
Query: 60  gtggctttcggaaaaggcttgtggttttcgtaataatgaggatgagcagcttcaattaca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gtggctttcggaaaaggcttgtggttttcgtaataatgaggatgagcagcttcaattaca 413

                                                                       
Query: 120 tagctttcggggcttgtttctgatctgtggcataacatgtttcctggcgcttcttatcta 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tagctttcggggcttgtttctgatctgtggcataacatgtttcctggcgcttcttatcta 473

                                                                       
Query: 180 cttcttttcaatagtacgccaattcagtcaaaacactcctcacaaagacagatcacgcat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cttcttttcaatagtacgccaattcagtcaaaacactcctcacaaagacagatcacgcat 533

                                            
Query: 240 ccagacttttctaaattttgttgatgaaaaaga 272
           |||||||||||||||||||||||||||||||||
Sbjct: 534 ccagacttttctaaattttgttgatgaaaaaga 566