Miyakogusa Predicted Gene
- Lj0g3v0193659.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0193659.1 tr|D7MAH5|D7MAH5_ARALL F-box family protein
OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAFT_493343,27.58,8e-18,seg,NULL; EBF1 (EIN3-BINDING F BOX
PROTEIN 1), UBIQUITIN-PROTEIN LIGASE,NULL; F-BOX/LEUCINE RICH
REP,CUFF.12259.1
(1428 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS319687 similar to UniRef100_A7QUZ0 Cluster: Chromosom... 1231 0.0
gnl|LJGI|FS346553 similar to UniRef100_A7QUZ0 Cluster: Chromosom... 601 e-171
gnl|LJGI|BP032005 weakly similar to UniRef100_Q8VYT5 Cluster: F-... 335 5e-91
gnl|LJGI|FS360087 weakly similar to UniRef100_A7PKI1 Cluster: Ch... 210 2e-53
>gnl|LJGI|FS319687 similar to UniRef100_A7QUZ0 Cluster: Chromosome chr16 scaffold_182,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_182, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (24%)
Length = 751
Score = 1231 bits (621), Expect = 0.0
Identities = 624/625 (99%)
Strand = Plus / Plus
Query: 1 atgtcgtttcaacccaaccaccacaacaacaaccctagcctccctcctccgccactaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 atgtcgtttcaacccaaccaccacaacaacaaccctagcctccctcctccgccactaacc 186
Query: 61 accgtcctcaccaccgccaaacctctcaaccacatgcttcttcttcccatgcaccttcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 accgtcctcaccaccgccaaacctctcaaccacatgcttcttcttcccatgcaccttcac 246
Query: 121 tccctctctgaccccaaatccaaaaccctaacccccaatttcaccaccaccatggaccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tccctctctgaccccaaatccaaaaccctaacccccaatttcaccaccaccatggaccca 306
Query: 181 acccttctcctctccgacgagcttctcctccaaatcctcgccaagcttcccaattcgccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 acccttctcctctccgacgagcttctcctccaaatcctcgccaagcttcccaattcgccg 366
Query: 241 agcaacctctccaattccctcgtttgcaagcgctggttgaatctccatggccgtttggtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agcaacctctccaattccctcgtttgcaagcgctggttgaatctccatggccgtttggtt 426
Query: 301 cgctcgctgaagatactggattggaacttcgtttcctctggtagattgactcacagattc 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 427 cgctcgctgaagatactggattggaacttcgtttcctctggtaggttgactcacagattc 486
Query: 361 cccaatctcacgcacgttgatttggttcctgcctgtttccactcgccgcgaaacgccgcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cccaatctcacgcacgttgatttggttcctgcctgtttccactcgccgcgaaacgccgcc 546
Query: 421 gccgccgttttcctcagccaccgtgtcgcctcgatgcgggtcgctcccgggtggtgcttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gccgccgttttcctcagccaccgtgtcgcctcgatgcgggtcgctcccgggtggtgcttc 606
Query: 481 ggcgaggataatatactacctgctgaagtcatcgacggcgggctcagagtaattgctaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ggcgaggataatatactacctgctgaagtcatcgacggcgggctcagagtaattgctaac 666
Query: 541 gggtgcccgaatctacggaagctcgaggtggttggagcgagcgaagcggggttggcttgc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gggtgcccgaatctacggaagctcgaggtggttggagcgagcgaagcggggttggcttgc 726
Query: 601 gtcggcgaggagtgttccacgctgc 625
|||||||||||||||||||||||||
Sbjct: 727 gtcggcgaggagtgttccacgctgc 751
>gnl|LJGI|FS346553 similar to UniRef100_A7QUZ0 Cluster: Chromosome chr16 scaffold_182,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr16 scaffold_182, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (22%)
Length = 600
Score = 601 bits (303), Expect = e-171
Identities = 315/319 (98%)
Strand = Plus / Minus
Query: 1109 aggactgctgggggttggataatagtgtgttgagtctcgcaatcatttgcaggcgggtag 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 aggactgctgggggttggataatagtgtgttgagtctcgcaatcatttgcaggcgggtag 541
Query: 1169 aattgtgttacttagaaggatgctcattgcttacaacggaaggtttggagctggtaatag 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aattgtgttacttagaaggatgctcattgcttacaacggaaggtttggagctggtaatag 481
Query: 1229 attcttggaaggagcttcaatgccttagagttgtctcgtgtaaaaatataaaggatagtg 1288
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 480 attcttggaaggagcttcaatgccttagagttgtttcgtgtaaaaatataaaggatagtg 421
Query: 1289 atatctctcctacactcgcaaccttgttcgccacgctcaaagagttgagatggaggccag 1348
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 atatttttcctacactcgcaaccttgttcgccacgctcaaagagttgagatggaggccag 361
Query: 1349 acacaaaacaccttctgtcatcaagtcttgaggagataagcatgggaaagaaaggtggta 1408
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 acacaaaaccccttctgtcatcaagtcttgaggagataagcatgggaaagaaaggtggta 301
Query: 1409 aatttttcaggctatgaat 1427
|||||||||||||||||||
Sbjct: 300 aatttttcaggctatgaat 282
>gnl|LJGI|BP032005 weakly similar to UniRef100_Q8VYT5 Cluster: F-box protein At5g07670;
n=1; Arabidopsis thaliana|Rep: F-box protein At5g07670 -
Arabidopsis thaliana (Mouse-ear cress), partial (10%)
Length = 449
Score = 335 bits (169), Expect = 5e-91
Identities = 169/169 (100%)
Strand = Plus / Minus
Query: 993 tttggggttctgccccgcgctcgaacggttgcatttgcagaagtgccagttgcgggataa 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tttggggttctgccccgcgctcgaacggttgcatttgcagaagtgccagttgcgggataa 390
Query: 1053 gaacggcactggagctgttttctctgtttgcagagctgccagggaggtcattcttcagga 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaacggcactggagctgttttctctgtttgcagagctgccagggaggtcattcttcagga 330
Query: 1113 ctgctgggggttggataatagtgtgttgagtctcgcaatcatttgcagg 1161
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctgctgggggttggataatagtgtgttgagtctcgcaatcatttgcagg 281
>gnl|LJGI|FS360087 weakly similar to UniRef100_A7PKI1 Cluster: Chromosome chr15
scaffold_19, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr15 scaffold_19, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (24%)
Length = 704
Score = 210 bits (106), Expect = 2e-53
Identities = 274/330 (83%)
Strand = Plus / Minus
Query: 1088 ctgccagggaggtcattcttcaggactgctgggggttggataatagtgtgttgagtctcg 1147
||||||||||| | |||||||||||||||||||| ||||||||||| |||| ||||| |
Sbjct: 693 ctgccagggagattattcttcaggactgctggggattggataatagcatgttcagtcttg 634
Query: 1148 caatcatttgcaggcgggtagaattgtgttacttagaaggatgctcattgcttacaacgg 1207
|| | ||||||||||||||| ||||| || ||||||||||||||||||||| ||||| |
Sbjct: 633 cagttatttgcaggcgggtaaaattgatttgcttagaaggatgctcattgctaacaacag 574
Query: 1208 aaggtttggagctggtaatagattcttggaaggagcttcaatgccttagagttgtctcgt 1267
||||||||||| ||||| ||| |||||||| ||||| | |||||||| ||||| |
Sbjct: 573 aaggtttggagtctgtaattcatttgtggaaggaacttcagagtcttagagtagtctcat 514
Query: 1268 gtaaaaatataaaggatagtgatatctctcctacactcgcaaccttgttcgccacgctca 1327
|||| |||| ||||| ||||| ||||||||| |||| ||||||||||| |||| ||||
Sbjct: 513 gtaagcatatcaaggacagtgaaatctctcctgcacttgcaaccttgtttaccaccctca 454
Query: 1328 aagagttgagatggaggccagacacaaaacaccttctgtcatcaagtcttgaggagataa 1387
|||| |||| |||||| |||||||| || || || ||||||| |||| | |||||
Sbjct: 453 aagaattgaaatggagtccagacaccaagtcactacttccatcaagacttgtagggataa 394
Query: 1388 gcatgggaaagaaaggtggtaaatttttca 1417
|||| ||||||||||| || ||||||||||
Sbjct: 393 gcataggaaagaaaggcgggaaatttttca 364