Miyakogusa Predicted Gene

Lj0g3v0192269.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0192269.1 Non Chatacterized Hit- tr|D8UJ57|D8UJ57_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,23.01,0.000000000002, ,CUFF.12162.1
         (1294 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BI418008 similar to UniRef100_A7QYT0 Cluster: Chromosom...   371   e-102
gnl|LJGI|TC78414 similar to UniRef100_A7QYT0 Cluster: Chromosome...    90   4e-17

>gnl|LJGI|BI418008 similar to UniRef100_A7QYT0 Cluster: Chromosome undetermined
            scaffold_254, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome undetermined scaffold_254, whole
            genome shotgun sequence - Vitis vinifera (Grape), partial
            (17%)
          Length = 409

 Score =  371 bits (187), Expect = e-102
 Identities = 194/195 (99%), Gaps = 1/195 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1101 gaaggacatggctcacgagattgagacagaaaggcccttagttgggcaatgccttataat 1160
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    gaaggacatggctcacgagattgagacagaaaggcccttagttgggcaatgccttataat 60

                                                                        
Query: 1161 ttggaacgagttgagatcaaaagtgaaggattggtgctccaaattccaaattgcagaagg 1220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   ttggaacgagttgagatcaaaagtgaaggattggtgctccaaattccaaattgcagaagg 120

                                                                        
Query: 1221 agcagtggataaattgattgaaaaaa-gttcaagaagaactaccaccctgcttgggctgc 1279
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 121  agcagtggataaattgattgaaaaaaggttcaagaagaactaccaccctgcttgggctgc 180

                           
Query: 1280 agcatacattctaga 1294
            |||||||||||||||
Sbjct: 181  agcatacattctaga 195


>gnl|LJGI|TC78414 similar to UniRef100_A7QYT0 Cluster: Chromosome undetermined
            scaffold_254, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome undetermined scaffold_254, whole
            genome shotgun sequence - Vitis vinifera (Grape), partial
            (39%)
          Length = 1764

 Score = 89.7 bits (45), Expect = 4e-17
 Identities = 187/233 (80%), Gaps = 1/233 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1060 tggaatgatttggaagcagtccatgctttggttaaattggtgaaggacatggctcacgag 1119
            ||||||||| | ||||||| |||  | ||| ||||| ||||||||||||||| |   |||
Sbjct: 254  tggaatgatcttgaagcagcccactcgttgattaaactggtgaaggacatggtttgtgag 313

                                                                        
Query: 1120 attgagacagaaaggcccttagttgggcaatgccttataatttggaacgagttgagatca 1179
            |||||||||||||||||  | ||||| ||||| |||    | ||| | || |||||| ||
Sbjct: 314  attgagacagaaaggccacttgttggacaatgtcttcccttgtgggatgaattgagagca 373

                                                                        
Query: 1180 aaagtgaaggattggtgctccaaattccaaattgcagaaggagcagtggataaattgatt 1239
            |||||||||  ||||||||||||||| ||| || |||||| |    |||| ||| | |||
Sbjct: 374  aaagtgaagatttggtgctccaaatttcaattttcagaagcattgttggagaaagttatt 433

                                                                 
Query: 1240 ga-aaaaagttcaagaagaactaccaccctgcttgggctgcagcatacattct 1291
            || |||  ||||| ||| |||||||||||||| |||||||| |||||||||||
Sbjct: 434  gagaaacggttcaggaaaaactaccaccctgcatgggctgctgcatacattct 486