Miyakogusa Predicted Gene

Lj0g3v0190999.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0190999.1 Non Chatacterized Hit- tr|A2YT86|A2YT86_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,41.51,3e-19,DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE
(RNA POLYMERASE III SUBUNIT 5),NULL; Sin_N,DNA-d,CUFF.12106.1
         (507 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC73962 weakly similar to UniRef100_A7PUY2 Cluster: Chr...  1005   0.0  

>gnl|LJGI|TC73962 weakly similar to UniRef100_A7PUY2 Cluster: Chromosome chr4
           scaffold_32, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr4 scaffold_32, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (19%)
          Length = 732

 Score = 1005 bits (507), Expect = 0.0
 Identities = 507/507 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggacatcgacggcttcgacgacgctccgacccgcgccccttctcgggtctctaagttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  atggacatcgacggcttcgacgacgctccgacccgcgccccttctcgggtctctaagttc 139

                                                                       
Query: 61  gcgccaaaaacatccaaactcatcaaacccaaatcggaacctgcccccaaacctgaaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 gcgccaaaaacatccaaactcatcaaacccaaatcggaacctgcccccaaacctgaaccc 199

                                                                       
Query: 121 gaaccagaacccgaaccatcctcgtccaaaccagagcctcctaatgtagaagacgacccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gaaccagaacccgaaccatcctcgtccaaaccagagcctcctaatgtagaagacgacccc 259

                                                                       
Query: 181 atggatgaagacaccgttgaagatcaaatcgtgcgcgaaatcgacgtcttcttcactcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atggatgaagacaccgttgaagatcaaatcgtgcgcgaaatcgacgtcttcttcactcct 319

                                                                       
Query: 241 tctctcgacgagaacactgagttgtatgttttgcagtatcctttgagaccttcatggcga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctctcgacgagaacactgagttgtatgttttgcagtatcctttgagaccttcatggcga 379

                                                                       
Query: 301 ccttacgagttcgaagaacgatgcaaagaggttaggttgaaacctatatcttcacgagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccttacgagttcgaagaacgatgcaaagaggttaggttgaaacctatatcttcacgagtg 439

                                                                       
Query: 361 gagattgatttatccattgatttggattcgcaaaatattgatagagactttgctgacaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gagattgatttatccattgatttggattcgcaaaatattgatagagactttgctgacaaa 499

                                                                       
Query: 421 tacagcattaccaagcagactttacacactccatgggagccagctactgcaaatggatgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tacagcattaccaagcagactttacacactccatgggagccagctactgcaaatggatgt 559

                                      
Query: 481 gttgtcgggcttcttacaggcgataag 507
           |||||||||||||||||||||||||||
Sbjct: 560 gttgtcgggcttcttacaggcgataag 586