Miyakogusa Predicted Gene

Lj0g3v0190229.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0190229.1 tr|F6HAA6|F6HAA6_VITVI Ubiquitin
carboxyl-terminal hydrolase OS=Vitis vinifera GN=VIT_06s0009g00890
,81.63,4e-17,Cysteine proteinases,NULL; UCH,Peptidase C19, ubiquitin
carboxyl-terminal hydrolase 2; SUBFAMILY NOT,TC64823.path1.1
         (159 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC64823 similar to UniRef100_A7PGA8 Cluster: Ubiquitin ...   315   4e-86
gnl|LJGI|TC75030 weakly similar to UniRef100_A7PGA8 Cluster: Ubi...    52   1e-06

>gnl|LJGI|TC64823 similar to UniRef100_A7PGA8 Cluster: Ubiquitin carboxyl-terminal
           hydrolase; n=1; Vitis vinifera|Rep: Ubiquitin
           carboxyl-terminal hydrolase - Vitis vinifera (Grape),
           partial (7%)
          Length = 730

 Score =  315 bits (159), Expect = 4e-86
 Identities = 159/159 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggaggtggtcattatactgcatttgtccatcatggtggtgatcaatggtatgacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   atgggaggtggtcattatactgcatttgtccatcatggtggtgatcaatggtatgacttt 68

                                                                       
Query: 61  gatgatagccgtgtttatcccatcagcaaggagaagataaagtcttcagctgcctatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  gatgatagccgtgtttatcccatcagcaaggagaagataaagtcttcagctgcctatgtt 128

                                                  
Query: 121 ttgttctatagaagagtttttgaagtatcaacagaatga 159
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ttgttctatagaagagtttttgaagtatcaacagaatga 167


>gnl|LJGI|TC75030 weakly similar to UniRef100_A7PGA8 Cluster: Ubiquitin
           carboxyl-terminal hydrolase; n=1; Vitis vinifera|Rep:
           Ubiquitin carboxyl-terminal hydrolase - Vitis vinifera
           (Grape), partial (16%)
          Length = 667

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 2   tgggaggtggtcattatactgcatttgtcc 31
           ||||||||||||||||||| ||||||||||
Sbjct: 186 tgggaggtggtcattatacagcatttgtcc 215