Miyakogusa Predicted Gene
- Lj0g3v0188699.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0188699.1 tr|B9N7R8|B9N7R8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_673686 PE=4
SV=1,73.25,0,Ribonuclease H-like,Ribonuclease H-like domain; C2H2 and
C2HC zinc fingers,NULL; BED zinc finger,Zin,CUFF.12024.1
(2034 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58577 similar to UniRef100_A7P282 Cluster: Chromosome... 1316 0.0
gnl|LJGI|TC76467 similar to UniRef100_A7P282 Cluster: Chromosome... 813 0.0
>gnl|LJGI|TC58577 similar to UniRef100_A7P282 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (22%)
Length = 826
Score = 1316 bits (664), Expect = 0.0
Identities = 670/672 (99%)
Strand = Plus / Plus
Query: 1 atggaaatagcaaatgattcaggcataaagaagccgaaaaggcttacatccgtcgtgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 atggaaatagcaaatgattcaggcataaagaagccgaaaaggcttacatccgtcgtgtgg 214
Query: 61 aatcactttgaaaggattaggaaggcggacgtctgctatgctgtttgcgtacactgtaac 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 215 aatcactttgaaaggattaggaaggcggatgtctgctatgctgtttgcgtacactgtaac 274
Query: 121 aagaagcttagtgggtcgagtaacagcggaactactcatctcagaaatcatttgatccga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aagaagcttagtgggtcgagtaacagcggaactactcatctcagaaatcatttgatccga 334
Query: 181 tgtctgaagcgggcgaactgcgatgtgtctcaactacttacagcaaagaggaggaaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtctgaagcgggcgaactgcgatgtgtctcaactacttacagcaaagaggaggaaaaaa 394
Query: 241 gataacaccgtcagtgttgcaaatattggttttgaggaaggtcaggggaaggaagaatac 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 395 gataacaccgtcagtgttgcaaattttggttttgaggaaggtcaggggaaggaagaatac 454
Query: 301 ataaagccaacaacaatcatcaagtttgagcaggatcataagaaagatgaaatcattaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ataaagccaacaacaatcatcaagtttgagcaggatcataagaaagatgaaatcattaac 514
Query: 361 tttgcgggtcgcagatttgatcccgagaagagtcaactggatcttgcaaacatgatcatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tttgcgggtcgcagatttgatcccgagaagagtcaactggatcttgcaaacatgatcatg 574
Query: 421 ttacatgggtatccattggccatggttgaacacgtggggtttaaggtctttgtgaagaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ttacatgggtatccattggccatggttgaacacgtggggtttaaggtctttgtgaagaac 634
Query: 481 cttcagcctctctttgagtttatgccaaatagtggtatagaggtttattgtttaaaaatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 cttcagcctctctttgagtttatgccaaatagtggtatagaggtttattgtttaaaaatc 694
Query: 541 tatcagagggagaaggagagagtttataacatgataaacaaattacatggcaggattaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tatcagagggagaaggagagagtttataacatgataaacaaattacatggcaggattaat 754
Query: 601 ctgtcaattgaactgtggtcttcggctgacaactcttcacatttatgtatagctgcccat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ctgtcaattgaactgtggtcttcggctgacaactcttcacatttatgtatagctgcccat 814
Query: 661 tacattgatgag 672
||||||||||||
Sbjct: 815 tacattgatgag 826
>gnl|LJGI|TC76467 similar to UniRef100_A7P282 Cluster: Chromosome chr19 scaffold_4,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_4, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (17%)
Length = 737
Score = 813 bits (410), Expect = 0.0
Identities = 420/422 (99%), Gaps = 1/422 (0%)
Strand = Plus / Plus
Query: 1614 cagcttacccagtacaagttatgatgttagggatagactgaaaggctttgacaagttcct 1673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagcttacccagtacaagttatgatgttagggatagactgaaaggctttgacaagttcct 60
Query: 1674 tcacgacacatcacagggtcagaatataacatcagacttggacaagtatttggaggaacc 1733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcacgacacatcacagggtcagaatataacatcagacttggacaagtatttggaggaacc 120
Query: 1734 gatttttcctcgtaactctgatttcaacatattgaactggtggaaagttcacatgccaag 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatttttcctcgtaactctgatttcaacatattgaactggtggaaagttcacatgccaag 180
Query: 1794 gtacccgatcttgtctatgatggcacgtgatgttcttgggactccaatgtcaacagcggc 1853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtacccgatcttgtctatgatggcacgtgatgttcttgggactccaatgtcaacagcggc 240
Query: 1854 accagacttggcatttagcactggagggagggtgctcgatcctacccggtcttcattaag 1913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 accagacttggcatttagcactggagggagggtgctcgatcctacccggtcttcattaag 300
Query: 1914 ccctgatacacgtcaagctttaatatgcacacaagattggctccaaaatgaatcaggagc 1973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccctgatacacgtcaagctttaatatgcacacaagattggctccaaaatgaatcaggagc 360
Query: 1974 agattcaagttcatcatcaagccattatgccctgccgcttcgta-tcgaaccaacttagt 2032
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 361 agattcaagttcatcatcaagccattatgccctgccgctttgtattcgaaccaacttagt 420
Query: 2033 tt 2034
||
Sbjct: 421 tt 422