Miyakogusa Predicted Gene
- Lj0g3v0188299.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0188299.1 Non Chatacterized Hit- tr|K4AEL9|K4AEL9_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si037326,50,3e-19,SYNOVIAL SARCOMA ASSOCIATED SS18 PROTEIN,SSXT;
SSXT,SSXT; seg,NULL,CUFF.12013.1
(573 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63529 similar to UniRef100_A7PXR7 Cluster: Chromosome... 773 0.0
gnl|LJGI|TC71979 similar to UniRef100_A7PXR7 Cluster: Chromosome... 737 0.0
gnl|LJGI|BW599243 weakly similar to UniRef100_Q4S5J9 Cluster: Ch... 98 7e-20
>gnl|LJGI|TC63529 similar to UniRef100_A7PXR7 Cluster: Chromosome chr15 scaffold_37,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr15 scaffold_37, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (97%)
Length = 1341
Score = 773 bits (390), Expect = 0.0
Identities = 393/394 (99%)
Strand = Plus / Plus
Query: 1 atgcagcagacaccgcaaatgattcctatgatgccttcattcccatctcaaaacattacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 atgcagcagacaccgcaaatgattcctatgatgccttcattcccatctcaaaacattacc 242
Query: 61 accgaacagattcaaaaatttcttgatgagaacaagaagctgattcttgcaatattggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 accgaacagattcaaaaatttcttgatgagaacaagaagctgattcttgcaatattggac 302
Query: 121 aatcaaaatcttgggaaacttgcagaatgtgcccaataccaagctcagcttcaaaagaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aatcaaaatcttgggaaacttgcagaatgtgcccaataccaagctcagcttcaaaagaat 362
Query: 181 ttgatgtacttagctgcaattgctgattcacagccacaaacacctgccatgcctccacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ttgatgtacttagctgcaattgctgattcacagccacaaacacctgccatgcctccacag 422
Query: 241 atggcgccacatcctgcgatgcaacaagggttctacatgcaacatcctcaggctgcagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 atggcgccacatcctgcgatgcaacaagggttctacatgcaacatcctcaggctgcagca 482
Query: 301 atggctcagcaacaaggaatgttcccccaaaaaatgccaatgcaatttggcaatccgcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 atggctcagcaacaaggaatgttcccccaaaaaatgccaatgcaatttggcaatccgcat 542
Query: 361 caaatgcaggatcagcaacaacagcagcagcagc 394
||||||||||||||||| ||||||||||||||||
Sbjct: 543 caaatgcaggatcagcagcaacagcagcagcagc 576
Score = 170 bits (86), Expect = 6e-42
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 390 gcagctggggctgagacctggagggatgaataacggcatgcatccaatgcacagcaacga 449
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gcagatggggctgagacctggagggatgaataacggcatgcatccaatgcacagcaacga 661
Query: 450 ggctgctcatggaggcggcagcagtggcgg 479
||||||||||||||||||||||||||||||
Sbjct: 662 ggctgctcatggaggcggcagcagtggcgg 691
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 547 ggcgcacaacagtggagatggtgaatc 573
|||||||||||||||||||||||||||
Sbjct: 794 ggcgcacaacagtggagatggtgaatc 820
>gnl|LJGI|TC71979 similar to UniRef100_A7PXR7 Cluster: Chromosome chr15 scaffold_37,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr15 scaffold_37, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (55%)
Length = 542
Score = 737 bits (372), Expect = 0.0
Identities = 372/372 (100%)
Strand = Plus / Plus
Query: 1 atgcagcagacaccgcaaatgattcctatgatgccttcattcccatctcaaaacattacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 atgcagcagacaccgcaaatgattcctatgatgccttcattcccatctcaaaacattacc 230
Query: 61 accgaacagattcaaaaatttcttgatgagaacaagaagctgattcttgcaatattggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 accgaacagattcaaaaatttcttgatgagaacaagaagctgattcttgcaatattggac 290
Query: 121 aatcaaaatcttgggaaacttgcagaatgtgcccaataccaagctcagcttcaaaagaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 aatcaaaatcttgggaaacttgcagaatgtgcccaataccaagctcagcttcaaaagaat 350
Query: 181 ttgatgtacttagctgcaattgctgattcacagccacaaacacctgccatgcctccacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttgatgtacttagctgcaattgctgattcacagccacaaacacctgccatgcctccacag 410
Query: 241 atggcgccacatcctgcgatgcaacaagggttctacatgcaacatcctcaggctgcagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 atggcgccacatcctgcgatgcaacaagggttctacatgcaacatcctcaggctgcagca 470
Query: 301 atggctcagcaacaaggaatgttcccccaaaaaatgccaatgcaatttggcaatccgcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 atggctcagcaacaaggaatgttcccccaaaaaatgccaatgcaatttggcaatccgcat 530
Query: 361 caaatgcaggat 372
||||||||||||
Sbjct: 531 caaatgcaggat 542
>gnl|LJGI|BW599243 weakly similar to UniRef100_Q4S5J9 Cluster: Chromosome 9 SCAF14729,
whole genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome 9 SCAF14729, whole genome
shotgun sequence - Tetraodon nigroviridis (Green
puffer), partial (6%)
Length = 449
Score = 97.6 bits (49), Expect = 7e-20
Identities = 267/333 (80%), Gaps = 5/333 (1%)
Strand = Plus / Plus
Query: 38 cattcccatctcaaaacattaccacc-gaacag-attcaaaaatttct-tgatgagaaca 94
|||||||||||||||| |||||||| ||||| |||| ||||||||| |||||||||||
Sbjct: 7 cattcccatctcaaaaggttaccaccagaacatcattccaaaatttctgtgatgagaaca 66
Query: 95 agaagctgattcttgcaatattggacaatcaaaatcttgggaaacttgcagaatgtgccc 154
|||||||||||||| || | || || || ||||||||||||| |||||||||
Sbjct: 67 tgaagctgattcttgatgaatcgtacgctcctcatgttgggaaacttgcgaaatgtgccc 126
Query: 155 aataccaagctcagcttcaaaagaatttgatgtacttagctgcaattgctgattcacagc 214
|||||| |||| ||||| |||||| |||||||||| || | |||||||||||| |
Sbjct: 127 cataccattctcatcttcattagaattggatgtacttaactacgattgctgattcatgac 186
Query: 215 cacaaacacctgccatgcctccacagatggcgccacatcctgcgatgcaacaagggttct 274
| ||||| | ||| |||||||||| |||| ||| |||| ||||| || || |||||||
Sbjct: 187 cccaaactcttgctttgcctccacatatggagcctcatcgtgcgaggcctcatgggttct 246
Query: 275 acatgcaacatcctcaggctgcagcaatggctcagcaacaaggaatgttcccccaaaaaa 334
|| ||| ||||||||| |||| | | |||||| || ||||||||||||||| |||
Sbjct: 247 acgtgccacatcctcatgctg-atcgttggctcggc-tgttggaatgttcccccaagaaa 304
Query: 335 tgccaatgcaatttggcaatccgcatcaaatgc 367
||||||||| |||||| |||| ||||||||||
Sbjct: 305 tgccaatgctttttggccatccacatcaaatgc 337