Miyakogusa Predicted Gene

Lj0g3v0181569.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0181569.1 Non Chatacterized Hit- tr|I3SAN6|I3SAN6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,52.63,1.5,seg,NULL,CUFF.11537.1
         (168 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC72365 homologue to UniRef100_A7PPK0 Cluster: Chromoso...   174   1e-43
gnl|LJGI|TC58860 similar to UniRef100_A6MZZ6 Cluster: H/ACA ribo...   167   3e-41
gnl|LJGI|TC67004                                                       64   3e-10

>gnl|LJGI|TC72365 homologue to UniRef100_A7PPK0 Cluster: Chromosome chr8 scaffold_23,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr8 scaffold_23, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (7%)
          Length = 1371

 Score =  174 bits (88), Expect = 1e-43
 Identities = 148/168 (88%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaggaattgctttcggtcgccgcttgatgtgtgtttgaagccaacgttgccaccgatt 60
           |||| ||||||||||||| |||||||||||||||  ||||||| ||||||||| ||||||
Sbjct: 163 atgatgaattgctttcggccgccgcttgatgtgtaattgaagctaacgttgccgccgatt 222

                                                                       
Query: 61  atggtagaaccaatcctggatcgacaccttaaatggtccactgttcattcgtcatcctcc 120
           ||||||||| |||||  | ||||||| || |||| |||| ||||||||  |||||  | |
Sbjct: 223 atggtagaatcaatcgcgtatcgacagctcaaatcgtccgctgttcatctgtcatttttc 282

                                                           
Query: 121 ctcacgagaaccctaactactatggttgaatgcatcagcagaggttga 168
           |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 283 ctcacgagaaccctaactactatggttgaatgcatcagcagaagttga 330


>gnl|LJGI|TC58860 similar to UniRef100_A6MZZ6 Cluster: H/ACA ribonucleoprotein
           complex subunit 2; n=2; Oryza sativa|Rep: H/ACA
           ribonucleoprotein complex subunit 2 - Oryza sativa
           subsp. indica (Rice), partial (29%)
          Length = 1269

 Score =  167 bits (84), Expect = 3e-41
 Identities = 147/168 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaggaattgctttcggtcgccgcttgatgtgtgtttgaagccaacgttgccaccgatt 60
           ||||| |||| ||||||| |||||| ||||||||||||||||| || || ||||||||||
Sbjct: 566 atgagcaattactttcggccgccgcatgatgtgtgtttgaagctaatgtcgccaccgatt 625

                                                                       
Query: 61  atggtagaaccaatcctggatcgacaccttaaatggtccactgttcattcgtcatcctcc 120
           ||||||||||||||  || ||||||| || | | ||||||||||||||| |||||||| |
Sbjct: 626 atggtagaaccaattgtgtatcgacagctcagacggtccactgttcatttgtcatccttc 685

                                                           
Query: 121 ctcacgagaaccctaactactatggttgaatgcatcagcagaggttga 168
            |||||||||||| |||| ||||||||||||||||| ||| |||||||
Sbjct: 686 atcacgagaaccccaactgctatggttgaatgcatctgcaaaggttga 733


>gnl|LJGI|TC67004 
          Length = 932

 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                       
Query: 48  gttgccaccgattatggtagaaccaatcctggatcgacaccttaaatggtccactgttca 107
           |||||||||| ||||||||||||||||| || |||||||  |  ||||||||||||||| 
Sbjct: 596 gttgccaccgtttatggtagaaccaatcatgtatcgacaaatcgaatggtccactgttcc 655

                   
Query: 108 ttcgtcat 115
            |||||||
Sbjct: 656 gtcgtcat 663