Miyakogusa Predicted Gene

Lj0g3v0181269.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0181269.1 tr|I9CIZ0|I9CIZ0_9RHIZ Fusaric acid resistance
protein OS=Methylobacterium sp. GXF4 PE=4
SV=1,34.43,2.6,seg,NULL,CUFF.11514.1
         (312 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC80338 weakly similar to UniRef100_Q2HW87 Cluster: RNA...   281   1e-75
gnl|LJGI|DC598175                                                     105   2e-22

>gnl|LJGI|TC80338 weakly similar to UniRef100_Q2HW87 Cluster: RNA-directed DNA
           polymerase (Reverse transcriptase); Zinc finger,
           CCHC-type; Peptidase aspartic, active site;
           Retrotransposon gag protein; n=1; Medicago
           truncatula|Rep: RNA-directed DNA polymerase (Reverse
           transcriptase); Zinc finger, CCHC-type; Peptidase
           aspartic, active site; Retrotransposon gag protein -
           Medicago truncatula (Barrel medic), partial (5%)
          Length = 764

 Score =  281 bits (142), Expect = 1e-75
 Identities = 192/210 (91%), Gaps = 2/210 (0%)
 Strand = Plus / Minus

                                                                       
Query: 105 ctgcttccccatccttattaaaccatctaaacctaattcttcaacggctaaactaaaaat 164
           ||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 762 ctgcttcaccatccttattaaaccatctaaacctaattcctcaagggctaaactaaaaat 703

                                                                       
Query: 165 cctaaaatctctcatagtccttgtctatatttttaatcctaactttcaccccctaactct 224
           ||||||||||||| ||||| |||||| |||||||||||||||| ||||||||||| || |
Sbjct: 702 cctaaaatctctcctagtctttgtctctatttttaatcctaaccttcaccccctagcttt 643

                                                                       
Query: 225 cttccatttcataaaacacacccagcatcac--nnnnnnntattttatttcattaaagta 282
           |||||||||||||||||||||||||||||||         ||||||||||||||||||||
Sbjct: 642 cttccatttcataaaacacacccagcatcacaaaaaaaaatattttatttcattaaagta 583

                                         
Query: 283 ttattatatcacctattaaaccaccataca 312
           ||||||||||||||||||||||||||||||
Sbjct: 582 ttattatatcacctattaaaccaccataca 553


>gnl|LJGI|DC598175 
          Length = 302

 Score =  105 bits (53), Expect = 2e-22
 Identities = 107/125 (85%)
 Strand = Plus / Plus

                                                                       
Query: 124 aaaccatctaaacctaattcttcaacggctaaactaaaaatcctaaaatctctcatagtc 183
           ||||||||||| |||||||| | |||| |||||||||||||||||||||||||| || ||
Sbjct: 5   aaaccatctaaccctaattccttaacgtctaaactaaaaatcctaaaatctctcctattc 64

                                                                       
Query: 184 cttgtctatatttttaatcctaactttcaccccctaactctcttccatttcataaaacac 243
            || ||| |||| |||| |||||| ||||||||||| || |||||  ||| |||||||||
Sbjct: 65  tttatctctattattaaccctaaccttcaccccctacctttcttcatttttataaaacac 124

                
Query: 244 accca 248
            ||||
Sbjct: 125 cccca 129