Miyakogusa Predicted Gene

Lj0g3v0180469.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0180469.1 tr|Q2PP99|Q2PP99_9HIV1 Envelope glycoprotein
gp160 OS=Human immunodeficiency virus 1 GN=env PE=3 SV=,37.93,0.048,
,CUFF.11457.1
         (241 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC62402                                                      406   e-113
gnl|LJGI|TC77166 weakly similar to UniRef100_UPI0000162A68 Clust...    58   3e-08
gnl|LJGI|TC61161                                                       58   3e-08

>gnl|LJGI|TC62402 
          Length = 945

 Score =  406 bits (205), Expect = e-113
 Identities = 232/241 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctcttgattccttttctctgcaacaatgtccatggaactcagacccattggtgctca 60
           ||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||
Sbjct: 255 atgctcttgattccttttctctgcaacaatggccatggcactcagatccattggtgctca 314

                                                                       
Query: 61  acccaagctcttgaatcctttcctctgcaacaatgttctcatcacctagtcattgagatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 315 acccaagctcttgaatcctttcctctgcaacaatgttctcatcacctagtcatcgagatc 374

                                                                       
Query: 121 tctctttctcggttctatatccatgctctcttctcactctcttcatgcaaccccattgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |
Sbjct: 375 tctctttctcggttctatatccatgctctcttctcactctcttcatgcaaagccattgct 434

                                                                       
Query: 181 ggtttgacgacgtcgcataccaccatcgttggcggtgtcacacgacccaaatctggttaa 240
           ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 435 ggtttgacggcgtcgcataccaccatcgttggcggtgtcgcacgacccaaatctggttaa 494

            
Query: 241 t 241
           |
Sbjct: 495 t 495


>gnl|LJGI|TC77166 weakly similar to UniRef100_UPI0000162A68 Cluster: binding; n=1;
          Arabidopsis thaliana|Rep: binding - Arabidopsis
          thaliana, partial (58%)
          Length = 1115

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                               
Query: 3  gctcttgattccttttctctgcaacaatgtccatggaactcagacccattggt 55
          ||||||||| ||||| |||| |||||||  |||||| ||||||||||||||||
Sbjct: 7  gctcttgatccctttcctctacaacaatcgccatggcactcagacccattggt 59


>gnl|LJGI|TC61161 
          Length = 738

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 3   gctcttgattccttttctctgcaacaatgtccatggaactcagacccattggt 55
           ||||||||| ||||| |||| |||||||  |||||| ||||||||||||||||
Sbjct: 69  gctcttgatccctttcctctacaacaatcgccatggcactcagacccattggt 121



 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 58 tcaacccaagctcttgaatcctttcctctgcaacaat 94
          |||||||||||||||||  |||||||||| |||||||
Sbjct: 60 tcaacccaagctcttgatccctttcctctacaacaat 96