Miyakogusa Predicted Gene
- Lj0g3v0180079.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0180079.1 tr|B6T3Q5|B6T3Q5_MAIZE Splicing factor U2af 38
kDa subunit OS=Zea mays PE=2 SV=1,54.5,1e-38,zf-CCCH,Zinc finger,
CCCH-type; ZF_C3H1,Zinc finger, CCCH-type; seg,NULL; U2AUXFACTOR,U2
auxiliary f,CUFF.11429.1
(460 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72712 similar to UniRef100_A7QPI3 Cluster: Chromosome... 898 0.0
gnl|LJGI|TC82561 similar to UniRef100_Q99L29 Cluster: cDNA seque... 76 2e-13
gnl|LJGI|TC61700 similar to UniRef100_A7PPK3 Cluster: Chromosome... 68 5e-11
gnl|LJGI|TC71172 similar to UniRef100_Q99L29 Cluster: cDNA seque... 54 8e-07
>gnl|LJGI|TC72712 similar to UniRef100_A7QPI3 Cluster: Chromosome chr18 scaffold_137,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_137, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (83%)
Length = 1286
Score = 898 bits (453), Expect = 0.0
Identities = 456/457 (99%)
Strand = Plus / Plus
Query: 1 atgatcggcaatgtttatgtgcagttccgggaggaggatgaggctgccaaggcgcttgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 atgatcggcaatgtttatgtgcagttccgggaggaggatgaggctgccaaggcgcttgcc 511
Query: 61 gcgctgcacgggagattttactccgggcggccgatcattgctgaattctcgcctgttact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gcgctgcacgggagattttactccgggcggccgatcattgctgaattctcgcctgttact 571
Query: 121 gatttccgtgaggcgacttgtaggcagtatgaggagaatagctgtaaccgcggtggttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gatttccgtgaggcgacttgtaggcagtatgaggagaatagctgtaaccgcggtggttac 631
Query: 181 tgcaacttcatgcatgttaagctgataggtagggacctgcggaggaagcttttttcatcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tgcaacttcatgcatgttaagctgataggtagggacctgcggaggaagcttttttcatcg 691
Query: 241 cactctttcaggattaggagcaggagtccggttcgtcggagcaggagcaggagtccgccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 cactctttcaggattaggagcaggagtccggttcgtcggagcaggagcaggagtccgccc 751
Query: 301 cgacgcagagggagtatggatcgcgagaggcgtcatagggacagggattatgattctcga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 cgacgcagagggagtatggatcgcgagaggcgtcatagggacagggattatgattctcga 811
Query: 361 gggaggaggagcagtgataggagaagcagtgatagggatggtgggggaaggaggaggcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 812 gggaggaggagcagtgataggagaagcagtgatagggatggtgggggaaggagaaggcat 871
Query: 421 ggtgggagtccggcgagggaagggagcgaagaacggc 457
|||||||||||||||||||||||||||||||||||||
Sbjct: 872 ggtgggagtccggcgagggaagggagcgaagaacggc 908
>gnl|LJGI|TC82561 similar to UniRef100_Q99L29 Cluster: cDNA sequence BC003883; n=1;
Mus musculus|Rep: cDNA sequence BC003883 - Mus musculus
(Mouse), partial (30%)
Length = 765
Score = 75.8 bits (38), Expect = 2e-13
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 121 gatttccgtgaggcgacttgtaggcagtatgaggagaatagctgtaaccgcggtggttac 180
||||| || ||||| ||||| ||||||||||||||||||| || ||||| ||||||||
Sbjct: 12 gattttcgggaggctacttgcaggcagtatgaggagaatacttgcaaccgtggtggttat 71
Query: 181 tgcaacttcatgca 194
||||||||||||||
Sbjct: 72 tgcaacttcatgca 85
>gnl|LJGI|TC61700 similar to UniRef100_A7PPK3 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (74%)
Length = 1346
Score = 67.9 bits (34), Expect = 5e-11
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 73 agattttactccgggcggccgatcattgctgaattctcgcctgttactgatttccgtgag 132
|||||||| || || || || |||||||| || || || |||||||| ||||| || ||
Sbjct: 557 agattttattcaggtcgacccatcattgccgacttttctcctgttacggattttcgagaa 616
Query: 133 gcgacttgtaggcagtatgaggagaatagctgtaaccgcggtggttactgcaacttcatg 192
|| |||||||||||||||||||| ||| || || || ||||| |||||||||||||||
Sbjct: 617 gctacttgtaggcagtatgaggaaaatgtatgcaatcgaggtggctactgcaacttcatg 676
Query: 193 ca 194
||
Sbjct: 677 ca 678
>gnl|LJGI|TC71172 similar to UniRef100_Q99L29 Cluster: cDNA sequence BC003883; n=1;
Mus musculus|Rep: cDNA sequence BC003883 - Mus musculus
(Mouse), partial (60%)
Length = 661
Score = 54.0 bits (27), Expect = 8e-07
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 124 ttccgtgaggcgacttgtaggcagtatgaggagaatagctgtaaccgcggtggttactgc 183
||||||||||| ||||| ||||||||||||||| || |||||||| || || || |||
Sbjct: 515 ttccgtgaggctacttgcaggcagtatgaggaggattcttgtaaccggggaggctattgc 574
Query: 184 aacttcatgca 194
||||| |||||
Sbjct: 575 aactttatgca 585