Miyakogusa Predicted Gene

Lj0g3v0178939.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0178939.1 tr|A9SJQ1|A9SJQ1_PHYPA Class II RPD3 type histone
deacetylase protein OS=Physcomitrella patens subsp,55,1e-18,no
description,Histone deacetylase domain; SUBFAMILY NOT NAMED,NULL;
HISTONE DEACETYLASE,Histone
dea,NODE_39709_length_327_cov_88.611618.path3.1
         (378 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC76195 similar to UniRef100_Q941D6 Cluster: Histone de...   733   0.0  

>gnl|LJGI|TC76195 similar to UniRef100_Q941D6 Cluster: Histone deacetylase 14; n=1;
           Arabidopsis thaliana|Rep: Histone deacetylase 14 -
           Arabidopsis thaliana (Mouse-ear cress), partial (36%)
          Length = 626

 Score =  733 bits (370), Expect = 0.0
 Identities = 376/378 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctcctccacaaccttcctcgttctcctgcttctgggagcgtgtcatttctcgttggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  atgctcctccacaaccttcctcgttctcctgcttctgggagcgtgtcatttctcgttggt 103

                                                                       
Query: 61  aatggattcttctgccgtaagagtcagagagttgtcaacagatgttcattcaggattagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 aatggattcttctgccgtaagagtcagagagttgtcaacagatgttcattcaggattagt 163

                                                                       
Query: 121 aattcttctctgccttcaattgagcaactcagtgatgcacgagtcatatattccgttgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 aattcttctctgccttcaattgagcaactcagtgatgcacgagtcatatattccgttgct 223

                                                                       
Query: 181 ccatccatgggccacaatcaggattctcatccagaatcacattttagggttccttcaatt 240
           ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 224 ccatccatgggccacaatcaggagtctcatccagaatcacattttagagttccttcaatt 283

                                                                       
Query: 241 gtgaatgctctagaagaaatgaagctcactccgaagtttcgtggctctgagataattgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gtgaatgctctagaagaaatgaagctcactccgaagtttcgtggctctgagataattgaa 343

                                                                       
Query: 301 cttcaacattttgagcctgcatcggtcgatgacattgcaagtgtgcatgcaagagcctat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cttcaacattttgagcctgcatcggtcgatgacattgcaagtgtgcatgcaagagcctat 403

                             
Query: 361 gtttttgggcttgaaaag 378
           ||||||||||||||||||
Sbjct: 404 gtttttgggcttgaaaag 421