Miyakogusa Predicted Gene
- Lj0g3v0172049.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0172049.1 tr|B9I2F7|B9I2F7_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_422581
PE=4,53.26,2e-19,EF_hand_5,NULL; EF_HAND_2,EF-HAND 2; EF-hand, calcium
binding motif,Calcium-binding EF-hand; no desc,CUFF.10804.1
(385 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC79637 similar to UniRef100_Q93YA8 Cluster: Calcium bi... 686 0.0
gnl|LJGI|TC68796 similar to UniRef100_Q93YA8 Cluster: Calcium bi... 190 4e-48
gnl|LJGI|BW598146 weakly similar to UniRef100_Q93YA8 Cluster: Ca... 54 6e-07
>gnl|LJGI|TC79637 similar to UniRef100_Q93YA8 Cluster: Calcium binding protein; n=1;
Sesbania rostrata|Rep: Calcium binding protein -
Sesbania rostrata, partial (63%)
Length = 455
Score = 686 bits (346), Expect = 0.0
Identities = 353/354 (99%), Gaps = 1/354 (0%)
Strand = Plus / Plus
Query: 1 atggcaactccccaacccgttcccgtagaatccgacccgactccaccgttccccgcaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 atggcaactccccaacccgttcccgtagaatccgacccgactccaccgttccccgcaaaa 65
Query: 61 accgacccggaacttcctcccaccgcctcaccctacctccaaaacacggccgaactcgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 accgacccggaacttcctcccaccgcctcaccctacctccaaaacacggccgaactcgag 125
Query: 121 agagtcttcaaccgcttcgacgccaacagcgacggtaagatctccgtcgacgagctcgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 agagtcttcaaccgcttcgacgccaacagcgacggtaagatctccgtcgacgagctcgac 185
Query: 181 agcgtcctccgcacgctcggatccggcgtgccaccggaggagcttcagcaggtcatggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 agcgtcctccgcacgctcggatccggcgtgccaccggaggagcttcagcaggtcatggaa 245
Query: 241 gacctcgacaccgaccgcgacggcttcatcagcctcccggagttcgctgccttctgccgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gacctcgacaccgaccgcgacggcttcatcagcctcccggagttcgctgccttctgccgc 305
Query: 301 tccgacgcgccggacggagg-aaccgccgagctccgtgacgcgttcgatctgta 353
|||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 306 tccgacgcgccggacggaggtaaccgccgagctccgtgacgcgttcgatctgta 359
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 358 ccgaggcggagcttcatctggccttgaa 385
||||||||||||||||||||||||||||
Sbjct: 386 ccgaggcggagcttcatctggccttgaa 413
>gnl|LJGI|TC68796 similar to UniRef100_Q93YA8 Cluster: Calcium binding protein; n=1;
Sesbania rostrata|Rep: Calcium binding protein -
Sesbania rostrata, partial (85%)
Length = 799
Score = 190 bits (96), Expect = 4e-48
Identities = 201/236 (85%)
Strand = Plus / Plus
Query: 112 gaactcgagagagtcttcaaccgcttcgacgccaacagcgacggtaagatctccgtcgac 171
|||||| || ||||||||| |||||||||| ||||| ||||||| |||||||||||| ||
Sbjct: 163 gaactcaagcgagtcttcacccgcttcgacaccaacggcgacggcaagatctccgtcaac 222
Query: 172 gagctcgacagcgtcctccgcacgctcggatccggcgtgccaccggaggagcttcagcag 231
|||||||||| |||||||||| | |||||||||||||| |||||||||||||| |||
Sbjct: 223 gagctcgacaacgtcctccgctccctcggatccggcgttccaccggaggagctcaagcgc 282
Query: 232 gtcatggaagacctcgacaccgaccgcgacggcttcatcagcctcccggagttcgctgcc 291
||||||| ||||||||| ||||| |||||||||||||| ||| | |||||||| |||
Sbjct: 283 gtcatggtggacctcgacggcgaccacgacggcttcatcaatctctccgagttcgccgcc 342
Query: 292 ttctgccgctccgacgcgccggacggaggaaccgccgagctccgtgacgcgttcga 347
||||||||||||||| | ||||||| || || ||||||||| ||||| |||||
Sbjct: 343 ttctgccgctccgacaccgcggacggtggtgcctccgagctccacgacgccttcga 398
>gnl|LJGI|BW598146 weakly similar to UniRef100_Q93YA8 Cluster: Calcium binding
protein; n=1; Sesbania rostrata|Rep: Calcium binding
protein - Sesbania rostrata, partial (48%)
Length = 446
Score = 54.0 bits (27), Expect = 6e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 122 gagtcttcaaccgcttcgacgccaacagcgacggtaagatctccgtc 168
||||||||| |||||| ||| ||||| ||||||| ||||||||||||
Sbjct: 441 gagtcttcacccgctttgacaccaacggcgacggcaagatctccgtc 395