Miyakogusa Predicted Gene
- Lj0g3v0171659.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0171659.1 Non Chatacterized Hit- tr|B9RLH2|B9RLH2_RICCO
Zinc finger protein, putative OS=Ricinus communis
GN=R,42.65,0,ZF_RING_2,Zinc finger, RING-type; no description,Zinc
finger, RING/FYVE/PHD-type; zf-RING_2,Zinc fin,CUFF.10776.1
(1155 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC68621 similar to UniRef100_A7PGH2 Cluster: Chromosome... 948 0.0
gnl|LJGI|TC80912 511 e-144
gnl|LJGI|TC81769 similar to UniRef100_A7PGH2 Cluster: Chromosome... 309 2e-83
gnl|LJGI|TC75582 similar to UniRef100_Q9SXW6 Cluster: Ring finge... 52 8e-06
gnl|LJGI|TC72773 similar to UniRef100_A7QEK6 Cluster: Chromosome... 52 8e-06
>gnl|LJGI|TC68621 similar to UniRef100_A7PGH2 Cluster: Chromosome chr17 scaffold_16,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_16, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (8%)
Length = 609
Score = 948 bits (478), Expect = 0.0
Identities = 522/544 (95%)
Strand = Plus / Plus
Query: 1 atggctgatgtgacgtacctccaccgcacccaccaccacgaacccgacgacgaccaaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 atggctgatgtgacgtacctccaccgcacccaccaccacgaacccgacgacgaccaaacc 125
Query: 61 ctaatccccttacctttctggtcaccatccgatttcgatttctactcctccgatcccgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ctaatccccttacctttctggtcaccatccgatttcgatttctactcctccgatcccgaa 185
Query: 121 ttcccnnnnnnnnnnnnnnnnnnnnnnttatcccaccgtgaaaaccaggtcaatttcgtc 180
||||| |||||||||||||||||||||||||||||||||
Sbjct: 186 ttcccccaccaccaccacaaccaccacttatcccaccgtgaaaaccaggtcaatttcgtc 245
Query: 181 atggacctcttccaccagcgcgttgagcaatcctcccaccacctcaccgacgatgatccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 atggacctcttccaccagcgcgttgagcaatcctcccaccacctcaccgacgatgatccc 305
Query: 241 cttcctcaatccctcaccgactccgtcttcgacggactcggcctcgatttagggttcgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cttcctcaatccctcaccgactccgtcttcgacggactcggcctcgatttagggttcgcc 365
Query: 301 cctgacgacgacaccgacgatttcttccccgctgccggatccggaaccctcgacgacctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cctgacgacgacaccgacgatttcttccccgctgccggatccggaaccctcgacgacctc 425
Query: 361 gccgcgcaaatcgccgggttcgtgtctgattccgacgacgaggaccccgacggggtactc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gccgcgcaaatcgccgggttcgtgtctgattccgacgacgaggaccccgacggggtactc 485
Query: 421 gggatctgtgttcactccgacgcggaggagcggaacgaaaacgacgacgtttcggggatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gggatctgtgttcactccgacgcggaggagcggaacgaaaacgacgacgtttcggggatt 545
Query: 481 cctctgtgttgggactcgctgcagttggaggagaatatcagagacagcaccagctatgag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cctctgtgttgggactcgctgcagttggaggagaatatcagagacagcaccagctatgag 605
Query: 541 gatt 544
||||
Sbjct: 606 gatt 609
>gnl|LJGI|TC80912
Length = 442
Score = 511 bits (258), Expect = e-144
Identities = 311/336 (92%)
Strand = Plus / Minus
Query: 1 atggctgatgtgacgtacctccaccgcacccaccaccacgaacccgacgacgaccaaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 atggctgatgtgacgtacctccaccgcacccaccaccacgaacccgacgacgaccaaacc 277
Query: 61 ctaatccccttacctttctggtcaccatccgatttcgatttctactcctccgatcccgaa 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 276 ctaatccccttacctttctggtcaccatccgatttcgatttctactccgccgagcccgaa 217
Query: 121 ttcccnnnnnnnnnnnnnnnnnnnnnnttatcccaccgtgaaaaccaggtcaatttcgtc 180
||||| |||||||||||||||||||||||||||||||||
Sbjct: 216 ttcccccaccaccaccacaaccaccacttatcccaccgtgaaaaccaggtcaatttcgtc 157
Query: 181 atggacctcttccaccagcgcgttgagcaatcctcccaccacctcaccgacgatgatccc 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 atggacctcttccaccagcccgttgagcaatcctcccaccacctcaccgacgatgatccc 97
Query: 241 cttcctcaatccctcaccgactccgtcttcgacggactcggcctcgatttagggttcgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 cttcctcaatccctcaccgactccgtcttcgacggactcggcctcgatttagggttcgcc 37
Query: 301 cctgacgacgacaccgacgatttcttccccgctgcc 336
||||||||||||||||||||||||||||||||||||
Sbjct: 36 cctgacgacgacaccgacgatttcttccccgctgcc 1
>gnl|LJGI|TC81769 similar to UniRef100_A7PGH2 Cluster: Chromosome chr17 scaffold_16,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_16, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (10%)
Length = 512
Score = 309 bits (156), Expect = 2e-83
Identities = 162/164 (98%)
Strand = Plus / Plus
Query: 992 gggaagaggtgaagcagttgccatgctcgcatcgttaccatggtgattgcattgtgcctt 1051
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 gggaagaggtgaagccgttgccatgctcgcatcgttaccctggtgattgcattgtgcctt 60
Query: 1052 ggttggggattaggaatacatgccctgtttgtcgctatgagtttcctactgatgatgctg 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggttggggattaggaatacatgccctgtttgtcgctatgagtttcctactgatgatgctg 120
Query: 1112 attatgagcgtaggagggttcagagatctgcacagagcctgtga 1155
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attatgagcgtaggagggttcagagatctgcacagagcctgtga 164
>gnl|LJGI|TC75582 similar to UniRef100_Q9SXW6 Cluster: Ring finger protein; n=1; Cicer
arietinum|Rep: Ring finger protein - Cicer arietinum
(Chickpea) (Garbanzo), partial (79%)
Length = 777
Score = 52.0 bits (26), Expect = 8e-06
Identities = 86/106 (81%)
Strand = Plus / Plus
Query: 1015 tgctcgcatcgttaccatggtgattgcattgtgccttggttggggattaggaatacatgc 1074
||||| ||| |||||||||| || |||||| |||| |||||| | ||| | || || |||
Sbjct: 372 tgctcccattgttaccatggggactgcattttgccgtggttgagtattcgcaacacctgc 431
Query: 1075 cctgtttgtcgctatgagtttcctactgatgatgctgattatgagc 1120
|| |||||||| | ||||| || || |||||| ||||||||||||
Sbjct: 432 ccggtttgtcggttcgagttgcccacggatgatcctgattatgagc 477
>gnl|LJGI|TC72773 similar to UniRef100_A7QEK6 Cluster: Chromosome chr17 scaffold_85,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_85, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (30%)
Length = 800
Score = 52.0 bits (26), Expect = 8e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 1072 tgccctgtttgtcgctatgagtttcctactgatgatgctgattatg 1117
|||||||| ||||| |||||||| || ||||| |||||||||||||
Sbjct: 755 tgccctgtgtgtcggtatgagttgcccactgacgatgctgattatg 800