Miyakogusa Predicted Gene

Lj0g3v0169939.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0169939.1 tr|B9H7E5|B9H7E5_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_209887
PE=4,39.38,7e-17, ,CUFF.10655.1
         (477 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC59885 weakly similar to UniRef100_P42460 Cluster: TPR...   924   0.0  

>gnl|LJGI|TC59885 weakly similar to UniRef100_P42460 Cluster: TPR repeat-containing
           protein Synpcc7942_0270; n=2; Synechococcus
           elongatus|Rep: TPR repeat-containing protein
           Synpcc7942_0270 - Synechococcus sp. (strain PCC 7942)
           (Anacystis nidulans R2), partial (6%)
          Length = 748

 Score =  924 bits (466), Expect = 0.0
 Identities = 466/466 (100%)
 Strand = Plus / Minus

                                                                       
Query: 12  agccttgcagttggatccaaataatgggtttgtcaaagagaatatgaaggcagctgtggc 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 agccttgcagttggatccaaataatgggtttgtcaaagagaatatgaaggcagctgtggc 632

                                                                       
Query: 72  aaaattgttagatgagcagcaacatggagatcccaatcagtatccaagatcatctgaaga 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aaaattgttagatgagcagcaacatggagatcccaatcagtatccaagatcatctgaaga 572

                                                                       
Query: 132 attccaaaaccagtctgcacggggaccaagaagccacggagtgccgcctccgtttacctc 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 attccaaaaccagtctgcacggggaccaagaagccacggagtgccgcctccgtttacctc 512

                                                                       
Query: 192 aatgccatttaaccctaataatcttgcaagtatgttcatgaacatggcgccaaatgccac 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aatgccatttaaccctaataatcttgcaagtatgttcatgaacatggcgccaaatgccac 452

                                                                       
Query: 252 aaatgcacatcaggggccacatcctcaagaaagggaagatgccaacactagtggtgctga 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aaatgcacatcaggggccacatcctcaagaaagggaagatgccaacactagtggtgctga 392

                                                                       
Query: 312 tgaaccagaaataagagctgggagcagcaattttagtatgaactttgagcaaattcctca 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tgaaccagaaataagagctgggagcagcaattttagtatgaactttgagcaaattcctca 332

                                                                       
Query: 372 ggatctatcaggggccttccaatctatgatggaaatgttttctgggtctgtaccccctgg 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ggatctatcaggggccttccaatctatgatggaaatgttttctgggtctgtaccccctgg 272

                                                         
Query: 432 gcaaccacatgatcaaacgaatggaagaacagcgccaaactaagcc 477
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gcaaccacatgatcaaacgaatggaagaacagcgccaaactaagcc 226