Miyakogusa Predicted Gene

Lj0g3v0167359.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0167359.1 tr|B9ILF6|B9ILF6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_779223 PE=4 SV=1,40.48,7.3,
,CUFF.10476.1
         (238 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC72712 similar to UniRef100_A7QPI3 Cluster: Chromosome...   325   7e-89
gnl|LJGI|AI967825 similar to UniRef100_Q945S1 Cluster: U2 auxili...   266   5e-71

>gnl|LJGI|TC72712 similar to UniRef100_A7QPI3 Cluster: Chromosome chr18 scaffold_137,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr18 scaffold_137, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (83%)
          Length = 1286

 Score =  325 bits (164), Expect = 7e-89
 Identities = 171/172 (99%), Gaps = 1/172 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    atgtttacatgtgagactggaatcattttctttgcacccctattcaattcaggcaggtcc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 atgtttacatgtgagactggaatcattttctttgcacccctattcaattcaggcaggtcc 1169

                                                                        
Query: 61   atctgtggattttataacaggctttctttgttgtcttttcagcactataggtatgtaaaa 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1170 atctgtggattttataacaggctttctttgttgtcttttcagcactataggtatgtaaaa 1229

                                                                
Query: 121  gcatgtttcagagaaatgtttgtgctgaatccaagtgctaaatactgtacaa 172
            |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1230 gcatgtttcagagaaatgtttgtgctgaatcc-agtgctaaatactgtacaa 1280


>gnl|LJGI|AI967825 similar to UniRef100_Q945S1 Cluster: U2 auxiliary factor small
           subunit; n=1; Arabidopsis thaliana|Rep: U2 auxiliary
           factor small subunit - Arabidopsis thaliana (Mouse-ear
           cress), partial (6%)
          Length = 390

 Score =  266 bits (134), Expect = 5e-71
 Identities = 137/138 (99%)
 Strand = Plus / Plus

                                                                       
Query: 101 agcactataggtatgtaaaagcatgtttcagagaaatgtttgtgctgaatccaagtgcta 160
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 agcactataggtatgtaaaagcatgtttcagagaaatgtttgtgctgaatccaagtgcta 253

                                                                       
Query: 161 aatactgtacaaatttgagacaactaagatggcaacttctggtttgttattattgtcttg 220
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 254 aatactgtacaaatttgagacaactaagatggcaacttctggtttgttgttattgtcttg 313

                             
Query: 221 ggagttctgccacttaaa 238
           ||||||||||||||||||
Sbjct: 314 ggagttctgccacttaaa 331