Miyakogusa Predicted Gene

Lj0g3v0165099.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0165099.1 Non Chatacterized Hit- tr|A5BP26|A5BP26_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,45.31,0,GAG-POL-RELATED RETROTRANSPOSON,NULL;
UBN2_3,NULL,CUFF.10341.1
         (1084 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC74397                                                       56   5e-07
gnl|LJGI|TC62219                                                       54   2e-06

>gnl|LJGI|TC74397 
          Length = 853

 Score = 56.0 bits (28), Expect = 5e-07
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                       
Query: 658 cgtggttctttgctgctcatgggtcctattccaccaattaacaaggttttctcctttgtc 717
           |||||| | ||||||||||||| ||||||||| || || || |||||||||||  |||| 
Sbjct: 183 cgtggtaccttgctgctcatggatcctattccgcctatcaataaggttttctctcttgtt 242

                   
Query: 718 attcaaga 725
           ||||||||
Sbjct: 243 attcaaga 250



 Score = 54.0 bits (27), Expect = 2e-06
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                       
Query: 853 aagaaggatcgtccaatttgttcccattgtggcctccctggacgcactgcagcaaagtgc 912
           ||||||||||| |||||||| || || |||||  | ||||| |  || ||||||||||||
Sbjct: 378 aagaaggatcgcccaatttgctctcactgtggtattcctggtcatacagcagcaaagtgc 437

                                              
Query: 913 ttcaagctccatggctattcaccagggatgaagcc 947
           || ||||||||||| ||| | || || ||||||||
Sbjct: 438 tttaagctccatggttatcctcctggaatgaagcc 472


>gnl|LJGI|TC62219 
          Length = 904

 Score = 54.0 bits (27), Expect = 2e-06
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                       
Query: 853 aagaaggatcgtccaatttgttcccattgtggcctccctggacgcactgcagcaaagtgc 912
           ||||||||||| |||||||| || || |||||  | ||||| |  || ||||||||||||
Sbjct: 349 aagaaggatcgcccaatttgctctcactgtggtattcctggtcatacagcagcaaagtgc 408

                                              
Query: 913 ttcaagctccatggctattcaccagggatgaagcc 947
           || ||||||||||| ||| | || || ||||||||
Sbjct: 409 tttaagctccatggttatcctcctggaatgaagcc 443