Miyakogusa Predicted Gene
- Lj0g3v0162439.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0162439.1 tr|I1MER5|I1MER5_SOYBN Ribosomal protein L34
OS=Glycine max PE=3 SV=1,64.17,5e-16,seg,NULL,CUFF.10298.1
(345 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC62387 similar to UniRef100_A5AGC2 Cluster: 50S riboso... 317 2e-86
gnl|LJGI|GO006079 similar to UniRef100_P82244 Cluster: 50S ribos... 301 1e-81
gnl|LJGI|AV428769 homologue to UniRef100_A8CDU8 Cluster: Proteas... 70 1e-11
>gnl|LJGI|TC62387 similar to UniRef100_A5AGC2 Cluster: 50S ribosomal protein L34;
n=1; Vitis vinifera|Rep: 50S ribosomal protein L34 -
Vitis vinifera (Grape), partial (49%)
Length = 725
Score = 317 bits (160), Expect = 2e-86
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 186 aggattgtcacttggattggatttgatatctaatgctgggactggaaatggaaaacgccg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aggattgtcacttggattggatttgatatctaatgctgggactggaaatggaaaacgccg 263
Query: 246 tggcctggttgtgagggcaggcaagaagtttgccctttgtcagaccaagagaaacagatc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggcctggttgtgagggcaggcaagaagtttgccctttgtcagaccaagagaaacagatc 323
Query: 306 acgaaaatcattggcacgcacccatggcttccgcagaagg 345
||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acgaaaatcattggcacgcacccatggcttccgcagaagg 363
Score = 222 bits (112), Expect = 1e-57
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 1 atggcttcgttatcagtgtctccatggataagcatgcgagttccaactgcttctctcgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 atggcttcgttatcagtgtctccatggataagcatgcgagttccaactgcttctctcgct 78
Query: 61 ttcactgcttcttcttcaattccaacaacttcttcactgtctctccacaaca 112
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 ttcactgcttcttcttcaattccaacaacttcttcactgtctctccacaaca 130
>gnl|LJGI|GO006079 similar to UniRef100_P82244 Cluster: 50S ribosomal protein L34,
chloroplast precursor; n=1; Spinacia oleracea|Rep: 50S
ribosomal protein L34, chloroplast precursor - Spinacia
oleracea (Spinach), partial (26%)
Length = 288
Score = 301 bits (152), Expect = 1e-81
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 186 aggattgtcacttggattggatttgatatctaatgctgggactggaaatggaaaacgccg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 aggattgtcacttggattggatttgatatctaatgctgggactggaaatggaaaacgccg 196
Query: 246 tggcctggttgtgagggcaggcaagaagtttgccctttgtcagaccaagagaaacagatc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tggcctggttgtgagggcaggcaagaagtttgccctttgtcagaccaagagaaacagatc 256
Query: 306 acgaaaatcattggcacgcacccatggcttcc 337
||||||||||||||||||||||||||||||||
Sbjct: 257 acgaaaatcattggcacgcacccatggcttcc 288
Score = 188 bits (95), Expect = 2e-47
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1 atggcttcgttatcagtgtctccatggataagcatgcgagttccaactgcttctctcgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 atggcttcgttatcagtgtctccatggataagcatgcgagttccaactgcttctctcgct 74
Query: 61 ttcactgcttcttcttcaattccaacaacttcttc 95
|||||||||||||||||||||||||||||||||||
Sbjct: 75 ttcactgcttcttcttcaattccaacaacttcttc 109
>gnl|LJGI|AV428769 homologue to UniRef100_A8CDU8 Cluster: Protease; n=1; Human
immunodeficiency virus 1|Rep: Protease - Human
immunodeficiency virus 1, partial (7%)
Length = 636
Score = 69.9 bits (35), Expect = 1e-11
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 195 acttggattggatttgatatctaatgctgggactggaaatggaaaacgccgtggcctggt 254
||||||||||||| |||| ||||| |||| ||||||||| | |||||||||||| ||||
Sbjct: 166 acttggattggatctgatgtctaaagctgagactggaaacgcaaaacgccgtgggctggg 225
Query: 255 tgtgagggcaggcaagaagtttgccct 281
|| || |||| |||||| ||||||||
Sbjct: 226 tgagacggcaagcaagacctttgccct 252