Miyakogusa Predicted Gene
- Lj0g3v0162339.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0162339.1 tr|B9IEL1|B9IEL1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_903433 PE=4
SV=1,30.46,4e-18,PPR_2,Pentatricopeptide repeat; PPR,Pentatricopeptide
repeat; PPR: pentatricopeptide repeat domain,P,CUFF.10102.1
(919 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS335330 weakly similar to UniRef100_A7QBT0 Cluster: Ch... 1114 0.0
gnl|LJGI|TC74584 similar to UniRef100_A2Q2T9 Cluster: Pentatrico... 327 7e-89
>gnl|LJGI|FS335330 weakly similar to UniRef100_A7QBT0 Cluster: Chromosome chr1
scaffold_75, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr1 scaffold_75, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (25%)
Length = 697
Score = 1114 bits (562), Expect = 0.0
Identities = 565/566 (99%)
Strand = Plus / Plus
Query: 1 atgcagtcattatactctcgcaaatgctgttgcagcttattttctaggttagcaatagcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 atgcagtcattatactctcgcaaatgctgttgcagcttattttctaggttagcaatagcg 191
Query: 61 tcttgtggagctagaggctttaggcatcaagaacaatgtcaaagccttatgagatctgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tcttgtggagctagaggctttaggcatcaagaacaatgtcaaagccttatgagatctgtc 251
Query: 121 gacattctcacttcaaaagttgccaaaggaagcagtgaggaggaaattatccggtctcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gacattctcacttcaaaagttgccaaaggaagcagtgaggaggaaattatccggtctcta 311
Query: 181 tgcaatgatcaagcttgtgatgccatacatctgtctccaaaccttattaacatattgctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgcaatgatcaagcttgtgatgccatacatctgtctccaaaccttattaacatattgctc 371
Query: 241 cgtcgatataaggatgattggaagtctgcattgggcttgttcaaatgggccagtttgcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cgtcgatataaggatgattggaagtctgcattgggcttgttcaaatgggccagtttgcat 431
Query: 301 tcaaactttcaacattccccagaatcatatgacatgatggtagacatattgggtagaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tcaaactttcaacattccccagaatcatatgacatgatggtagacatattgggtagaatg 491
Query: 361 aaggtaatggacaagttgagagatctcttagaccaaatgcgttgtgaggggagtatcatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aaggtaatggacaagttgagagatctcttagaccaaatgcgttgtgaggggagtatcatc 551
Query: 421 actctcaatactatagccaaggtaatgagaaggtttgttggggcaggccagtgggcagat 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 552 actctcaatactatagccaaggtaatgagaaggtttgttggggcaggacagtgggcagat 611
Query: 481 gctgtgagaatatttgatgacttgcaaactcttggcttggagaagaacacagaatccatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gctgtgagaatatttgatgacttgcaaactcttggcttggagaagaacacagaatccatg 671
Query: 541 aacttgttgcttgataccctatgcaa 566
||||||||||||||||||||||||||
Sbjct: 672 aacttgttgcttgataccctatgcaa 697
>gnl|LJGI|TC74584 similar to UniRef100_A2Q2T9 Cluster: Pentatricopeptide repeat; n=1;
Medicago truncatula|Rep: Pentatricopeptide repeat -
Medicago truncatula (Barrel medic), complete
Length = 756
Score = 327 bits (165), Expect = 7e-89
Identities = 165/165 (100%)
Strand = Plus / Plus
Query: 755 tcatccaatgttattgtaatgaacagaattttagcaaggtctatgagcttcttgatgaaa 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcatccaatgttattgtaatgaacagaattttagcaaggtctatgagcttcttgatgaaa 60
Query: 815 tgcaagctcaagattgctccccaaatgtggttacttatactatcatcatgtgtgcactgg 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgcaagctcaagattgctccccaaatgtggttacttatactatcatcatgtgtgcactgg 120
Query: 875 caaaggcagaaaaatttgatgaagctttgcaagtaattgagagaa 919
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caaaggcagaaaaatttgatgaagctttgcaagtaattgagagaa 165