Miyakogusa Predicted Gene
- Lj0g3v0161739.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0161739.1 tr|F2E7L1|F2E7L1_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,100,0,HISTONE_H4,Histone
H4, conserved site; Histone H4,Histone H4; HISTONEH4,Histone H4;
Histone-fold,His,CUFF.10048.1
(313 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC76382 homologue to UniRef100_UPI000050340F Cluster: H... 361 2e-99
gnl|LJGI|TC70944 homologue to UniRef100_UPI000050340F Cluster: H... 361 2e-99
gnl|LJGI|TC80187 homologue to UniRef100_UPI000050340F Cluster: H... 242 1e-63
gnl|LJGI|FS336919 homologue to UniRef100_UPI0000EB00E4 Cluster: ... 157 5e-38
gnl|LJGI|TC68590 homologue to UniRef100_UPI0000EB00E4 Cluster: H... 137 4e-32
gnl|LJGI|BE122552 homologue to UniRef100_UPI00001D6F72 Cluster: ... 129 1e-29
gnl|LJGI|TC68238 homologue to UniRef100_UPI000066070E Cluster: H... 123 7e-28
gnl|LJGI|TC72402 homologue to UniRef100_UPI00001D6F72 Cluster: h... 119 1e-26
gnl|LJGI|GO024544 similar to UniRef100_UPI000065EF81 Cluster: Ho... 107 4e-23
gnl|LJGI|TC65715 UniRef100_A4RS62 Cluster: Histone H4; n=1; Ostr... 107 4e-23
gnl|LJGI|TC65660 homologue to UniRef100_Q4SKJ3 Cluster: Histone ... 101 2e-21
>gnl|LJGI|TC76382 homologue to UniRef100_UPI000050340F Cluster: Histone H4 [Contains:
Osteogenic growth peptide (OGP)].; n=1; Rattus
norvegicus|Rep: Histone H4 [Contains: Osteogenic growth
peptide (OGP)]. - Rattus norvegicus, complete
Length = 534
Score = 361 bits (182), Expect = 2e-99
Identities = 278/310 (89%)
Strand = Plus / Plus
Query: 1 atgtcaggtcgtggaaagggtggaaaggggcttggcaagggcggagcaaagaggcacagg 60
||||| |||||||||||||| |||||||| || ||||||||||| || ||||||||||||
Sbjct: 50 atgtctggtcgtggaaagggcggaaagggactcggcaagggcggcgccaagaggcacagg 109
Query: 61 aaggttctgcgcgacaacatccaaggcatcacgaagcccgcgattcggaggctggcgagg 120
||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 110 aaggtgctccgcgacaacatccagggcatcacgaagccggcgattcggaggctggcgagg 169
Query: 121 agaggcggcgtgaagaggatcagcggtctcatctacgaggaaaccaggggagtgctcaag 180
|||||||| || ||||||||||||||| | ||||| ||||| || ||||||||||| |||
Sbjct: 170 agaggcggtgtcaagaggatcagcggtttgatctatgaggagactaggggagtgctgaag 229
Query: 181 atcttcttggagaacgtgatccgtgatgcggtgacgtacacggagcacgccaggaggaag 240
|| ||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||
Sbjct: 230 attttcttggagaacgtgattcgtgatgcggtgacttacacggagcatgctaggaggaag 289
Query: 241 acggtcaccgccatggatgtcgtttatgctctcaagaggcagggcaggactctctatggc 300
||||| || || |||||||| ||||||||||||||||||||||| || || ||||||||
Sbjct: 290 acggtgactgctatggatgtggtttatgctctcaagaggcagggaagaaccctctatgga 349
Query: 301 ttcggaggtt 310
|| |||||||
Sbjct: 350 tttggaggtt 359
>gnl|LJGI|TC70944 homologue to UniRef100_UPI000050340F Cluster: Histone H4 [Contains:
Osteogenic growth peptide (OGP)].; n=1; Rattus
norvegicus|Rep: Histone H4 [Contains: Osteogenic growth
peptide (OGP)]. - Rattus norvegicus, complete
Length = 495
Score = 361 bits (182), Expect = 2e-99
Identities = 278/310 (89%)
Strand = Plus / Plus
Query: 1 atgtcaggtcgtggaaagggtggaaaggggcttggcaagggcggagcaaagaggcacagg 60
||||| ||||||||||||||||| ||||| || |||||||| ||||| ||||||||||||
Sbjct: 59 atgtctggtcgtggaaagggtggcaagggactcggcaagggaggagccaagaggcacagg 118
Query: 61 aaggttctgcgcgacaacatccaaggcatcacgaagcccgcgattcggaggctggcgagg 120
||||| ||||||||||||||||| |||||||||||||| |||||||||||| ||||||||
Sbjct: 119 aaggtgctgcgcgacaacatccagggcatcacgaagccggcgattcggaggttggcgagg 178
Query: 121 agaggcggcgtgaagaggatcagcggtctcatctacgaggaaaccaggggagtgctcaag 180
||||| ||||||||||||||||| || | ||||| ||||| || ||||| ||| | |||
Sbjct: 179 agaggtggcgtgaagaggatcagtgggttgatctatgaggagactaggggtgtgttgaag 238
Query: 181 atcttcttggagaacgtgatccgtgatgcggtgacgtacacggagcacgccaggaggaag 240
|||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||
Sbjct: 239 atcttcttggagaatgtgattcgtgatgcggtgacgtacacggagcatgctaggaggaag 298
Query: 241 acggtcaccgccatggatgtcgtttatgctctcaagaggcagggcaggactctctatggc 300
|| || || || |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 299 actgtgactgctatggatgttgtttatgctctcaagaggcagggaaggactctctatgga 358
Query: 301 ttcggaggtt 310
||||||||||
Sbjct: 359 ttcggaggtt 368
>gnl|LJGI|TC80187 homologue to UniRef100_UPI000050340F Cluster: Histone H4 [Contains:
Osteogenic growth peptide (OGP)].; n=1; Rattus
norvegicus|Rep: Histone H4 [Contains: Osteogenic growth
peptide (OGP)]. - Rattus norvegicus, complete
Length = 492
Score = 242 bits (122), Expect = 1e-63
Identities = 263/310 (84%)
Strand = Plus / Plus
Query: 1 atgtcaggtcgtggaaagggtggaaaggggcttggcaagggcggagcaaagaggcacagg 60
||||| |||||||||||||| || ||||| | || ||||| |||||||||||||| |
Sbjct: 16 atgtcgggtcgtggaaagggaggcaagggattgggaaagggaggagcaaagaggcatcgc 75
Query: 61 aaggttctgcgcgacaacatccaaggcatcacgaagcccgcgattcggaggctggcgagg 120
||||| ||||||||||||||||| || ||||||||||| ||||||||||| |||||||
Sbjct: 76 aaggtgctgcgcgacaacatccagggaatcacgaagccggcgattcggagattggcgaga 135
Query: 121 agaggcggcgtgaagaggatcagcggtctcatctacgaggaaaccaggggagtgctcaag 180
|||||||| |||||||||||||| || | ||||| ||||||||||| || |||||||||
Sbjct: 136 agaggcggagtgaagaggatcagtggcttgatctatgaggaaaccagaggggtgctcaag 195
Query: 181 atcttcttggagaacgtgatccgtgatgcggtgacgtacacggagcacgccaggaggaag 240
|| || | ||||| ||||| ||||||||||| || ||||| ||||| || |||||||||
Sbjct: 196 atttttctcgagaatgtgattcgtgatgcggttacatacaccgagcatgcgaggaggaag 255
Query: 241 acggtcaccgccatggatgtcgtttatgctctcaagaggcagggcaggactctctatggc 300
|| || || || |||||||| ||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 256 actgttactgctatggatgttgtttatgctcttaagaggcagggaaggaccctctatgga 315
Query: 301 ttcggaggtt 310
||||| ||||
Sbjct: 316 ttcgggggtt 325
>gnl|LJGI|FS336919 homologue to UniRef100_UPI0000EB00E4 Cluster: Histone H4; n=1;
Canis lupus familiaris|Rep: Histone H4 - Canis
familiaris, partial (96%)
Length = 529
Score = 157 bits (79), Expect = 5e-38
Identities = 244/299 (81%)
Strand = Plus / Plus
Query: 13 ggaaagggtggaaaggggcttggcaagggcggagcaaagaggcacaggaaggttctgcgc 72
|||||||| || ||||| | |||||||| ||||| ||| | ||||||||||||||| |
Sbjct: 79 ggaaagggaggcaagggtttgggcaagggaggagctaagcgtcacaggaaggttctgagg 138
Query: 73 gacaacatccaaggcatcacgaagcccgcgattcggaggctggcgaggagaggcggcgtg 132
|| |||||||| || ||||| ||||| |||||||| | || || ||| | ||||| |||
Sbjct: 139 gataacatccagggaatcaccaagcctgcgattcgccgtctcgcaaggcgtggcggtgtg 198
Query: 133 aagaggatcagcggtctcatctacgaggaaaccaggggagtgctcaagatcttcttggag 192
||| | ||||||||||||||||| || ||||| | || || |||||||||||| | |||
Sbjct: 199 aagcgtatcagcggtctcatctatgaagaaactcgcggtgttctcaagatcttcctcgag 258
Query: 193 aacgtgatccgtgatgcggtgacgtacacggagcacgccaggaggaagacggtcaccgcc 252
||||| || || ||||| ||||| ||||| |||||||| | | ||||| || || ||
Sbjct: 259 aacgttattcgcgatgctgtgacctacactgagcacgctcgccgtaagactgtgacggcg 318
Query: 253 atggatgtcgtttatgctctcaagaggcagggcaggactctctatggcttcggaggtta 311
|||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 319 atggatgttgtttacgctctcaagaggcagggcaggaccctctatggtttcggtggtta 377
>gnl|LJGI|TC68590 homologue to UniRef100_UPI0000EB00E4 Cluster: Histone H4; n=1;
Canis lupus familiaris|Rep: Histone H4 - Canis
familiaris, partial (97%)
Length = 590
Score = 137 bits (69), Expect = 4e-32
Identities = 207/253 (81%)
Strand = Plus / Plus
Query: 59 ggaaggttctgcgcgacaacatccaaggcatcacgaagcccgcgattcggaggctggcga 118
||||||||||| | || |||||||| || ||||| ||||| |||||||| | || || |
Sbjct: 131 ggaaggttctgagggataacatccagggaatcaccaagcctgcgattcgccgtctcgcaa 190
Query: 119 ggagaggcggcgtgaagaggatcagcggtctcatctacgaggaaaccaggggagtgctca 178
|| | ||||| |||||| | ||||||||||||||||| || ||||| | || || ||||
Sbjct: 191 ggcgtggcggtgtgaagcgtatcagcggtctcatctatgaagaaactcgcggtgttctca 250
Query: 179 agatcttcttggagaacgtgatccgtgatgcggtgacgtacacggagcacgccaggagga 238
|||||||| | |||||||| || || ||||| ||||| ||||| |||||||| | | |
Sbjct: 251 agatcttcctcgagaacgttattcgcgatgctgtgacctacactgagcacgctcgccgta 310
Query: 239 agacggtcaccgccatggatgtcgtttatgctctcaagaggcagggcaggactctctatg 298
|||| || || || |||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 311 agactgtgacggcgatggatgttgtttacgctctcaagaggcagggcaggaccctctatg 370
Query: 299 gcttcggaggtta 311
| ||||| |||||
Sbjct: 371 gtttcggtggtta 383
>gnl|LJGI|BE122552 homologue to UniRef100_UPI00001D6F72 Cluster: histone cluster 4,
H4; n=2; Mus musculus|Rep: histone cluster 4, H4 - Mus
musculus, partial (79%)
Length = 372
Score = 129 bits (65), Expect = 1e-29
Identities = 200/245 (81%)
Strand = Plus / Plus
Query: 1 atgtcaggtcgtggaaagggtggaaaggggcttggcaagggcggagcaaagaggcacagg 60
|||||||| |||||||| || || ||||| | || ||||| |||||||| | ||| |
Sbjct: 125 atgtcagggcgtggaaaaggaggcaagggattaggaaagggaggagcaaaacgacaccgt 184
Query: 61 aaggttctgcgcgacaacatccaaggcatcacgaagcccgcgattcggaggctggcgagg 120
||||| ||||||||||||||||| ||||| || ||||| ||||||||| | ||||| |
Sbjct: 185 aaggtgctgcgcgacaacatccagggcataaccaagccggcgattcggcgtttggcgcgt 244
Query: 121 agaggcggcgtgaagaggatcagcggtctcatctacgaggaaaccaggggagtgctcaag 180
|| |||||||||||| | |||||||| || ||||| ||||| || | || |||||||||
Sbjct: 245 aggggcggcgtgaagcgtatcagcggccttatctatgaggagacacgcggcgtgctcaag 304
Query: 181 atcttcttggagaacgtgatccgtgatgcggtgacgtacacggagcacgccaggaggaag 240
||||| | ||||| |||||||| ||||| || || ||||| |||||||| |||||||||
Sbjct: 305 atctttctcgagaatgtgatccgggatgctgttacctacactgagcacgcgaggaggaag 364
Query: 241 acggt 245
|||||
Sbjct: 365 acggt 369
>gnl|LJGI|TC68238 homologue to UniRef100_UPI000066070E Cluster: Homolog of Homo
sapiens "H2A histone family, member X (H2AFX), mRNA;
n=1; Takifugu rubripes|Rep: Homolog of Homo sapiens "H2A
histone family, member X (H2AFX), mRNA - Takifugu
rubripes, partial (33%)
Length = 603
Score = 123 bits (62), Expect = 7e-28
Identities = 215/266 (80%)
Strand = Plus / Plus
Query: 34 ggcaagggcggagcaaagaggcacaggaaggttctgcgcgacaacatccaaggcatcacg 93
|||||||| ||||| || ||||| | ||||| || |||||||||||||| || ||||||
Sbjct: 100 ggcaagggaggagccaaacggcaccgtaaggtcctccgcgacaacatccagggaatcacg 159
Query: 94 aagcccgcgattcggaggctggcgaggagaggcggcgtgaagaggatcagcggtctcatc 153
||||| ||||||||| | |||| | || || ||||||||| | ||||| || | |||
Sbjct: 160 aagccagcgattcggcgtttggctcgcaggggtggcgtgaagcgtatcagtggcttgatc 219
Query: 154 tacgaggaaaccaggggagtgctcaagatcttcttggagaacgtgatccgtgatgcggtg 213
|| ||||| || | || || ||||||||||| | ||||| ||||| |||||||| ||
Sbjct: 220 tatgaggagactcgtggtgttctcaagatctttcttgagaatgtgattcgtgatgctgtt 279
Query: 214 acgtacacggagcacgccaggaggaagacggtcaccgccatggatgtcgtttatgctctc 273
|| ||||| ||||| || ||||||||||| || || ||||||||||| || |||||||||
Sbjct: 280 acctacactgagcatgctaggaggaagactgttactgccatggatgtggtgtatgctctc 339
Query: 274 aagaggcagggcaggactctctatgg 299
||||| ||||| ||||| ||||||||
Sbjct: 340 aagagacagggaaggacactctatgg 365
>gnl|LJGI|TC72402 homologue to UniRef100_UPI00001D6F72 Cluster: histone cluster 4,
H4; n=2; Mus musculus|Rep: histone cluster 4, H4 - Mus
musculus, complete
Length = 612
Score = 119 bits (60), Expect = 1e-26
Identities = 219/272 (80%)
Strand = Plus / Plus
Query: 37 aagggcggagcaaagaggcacaggaaggttctgcgcgacaacatccaaggcatcacgaag 96
||||| ||||| ||| | ||||||||||||||| | || |||||||| || ||||| |||
Sbjct: 94 aagggaggagcgaagcgtcacaggaaggttctgagggataacatccagggaatcaccaag 153
Query: 97 cccgcgattcggaggctggcgaggagaggcggcgtgaagaggatcagcggtctcatctac 156
|| || ||||| | || || ||| | || || |||||| | |||||||||||||||||
Sbjct: 154 cctgccattcgccgtctcgcaaggcgtggtggtgtgaagcgtatcagcggtctcatctat 213
Query: 157 gaggaaaccaggggagtgctcaagatcttcttggagaacgtgatccgtgatgcggtgacg 216
|| ||||| | || || |||||||||||| | |||||||| || |||||||| || ||
Sbjct: 214 gaagaaactcgcggtgttctcaagatcttcctcgagaacgttattcgtgatgctgttacc 273
Query: 217 tacacggagcacgccaggaggaagacggtcaccgccatggatgtcgtttatgctctcaag 276
||||| |||||||| | | ||||| || || || ||||| || ||||| |||||||||
Sbjct: 274 tacactgagcacgctcgccgcaagactgtgacggcgatggacgttgtttacgctctcaag 333
Query: 277 aggcagggcaggactctctatggcttcggagg 308
|||||||||||||| |||||||| || |||||
Sbjct: 334 aggcagggcaggaccctctatggttttggagg 365
>gnl|LJGI|GO024544 similar to UniRef100_UPI000065EF81 Cluster: Homolog of Homo sapiens
"H2A histone family, member X (H2AFX), mRNA; n=1;
Takifugu rubripes|Rep: Homolog of Homo sapiens "H2A
histone family, member X (H2AFX), mRNA - Takifugu
rubripes, partial (23%)
Length = 650
Score = 107 bits (54), Expect = 4e-23
Identities = 141/170 (82%)
Strand = Plus / Plus
Query: 127 ggcgtgaagaggatcagcggtctcatctacgaggaaaccaggggagtgctcaagatcttc 186
||||| ||||| ||||||||||||||||| ||||| || | | ||| | |||||||
Sbjct: 437 ggcgttaagagcatcagcggtctcatctatgaggagactcgcagtgtgttgtagatcttt 496
Query: 187 ttggagaacgtgatccgtgatgcggtgacgtacacggagcacgccaggaggaagacggtc 246
| |||||||||||| | ||||| |||| ||||| |||||| ||| | |||||| | |
Sbjct: 497 ctcgagaacgtgatctgcgatgctatgacctacactgagcacaccaagtggaagatgatg 556
Query: 247 accgccatggatgtcgtttatgctctcaagaggcagggcaggactctcta 296
|||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 557 accgccatggatatcgtttatgctctcaagaggcagggcaggaccctcta 606
>gnl|LJGI|TC65715 UniRef100_A4RS62 Cluster: Histone H4; n=1; Ostreococcus lucimarinus
CCE9901|Rep: Histone H4 - Ostreococcus lucimarinus
(strain CCE9901), complete
Length = 626
Score = 107 bits (54), Expect = 4e-23
Identities = 186/230 (80%)
Strand = Plus / Plus
Query: 61 aaggttctgcgcgacaacatccaaggcatcacgaagcccgcgattcggaggctggcgagg 120
|||||||| ||||||||||| || || ||||||||||| ||||||||| | |||| |
Sbjct: 156 aaggttctccgcgacaacattcagggaatcacgaagccagcgattcggcgattggctcgc 215
Query: 121 agaggcggcgtgaagaggatcagcggtctcatctacgaggaaaccaggggagtgctcaag 180
|| || ||||||||| | ||||| || | ||||| ||||| || | || || ||||||
Sbjct: 216 aggggtggcgtgaagcgtatcagtggcttgatctatgaggagactcgtggtgttctcaag 275
Query: 181 atcttcttggagaacgtgatccgtgatgcggtgacgtacacggagcacgccaggaggaag 240
||||| | ||||| ||||| |||||||| || || ||||| ||||| || |||||||||
Sbjct: 276 atctttctcgagaatgtgattcgtgatgctgttacctacactgagcatgctaggaggaag 335
Query: 241 acggtcaccgccatggatgtcgtttatgctctcaagaggcagggcaggac 290
|| || || ||||||||||| || |||||||||||||| ||||| |||||
Sbjct: 336 actgttactgccatggatgtggtgtatgctctcaagagacagggaaggac 385
>gnl|LJGI|TC65660 homologue to UniRef100_Q4SKJ3 Cluster: Histone H4; n=1; Tetraodon
nigroviridis|Rep: Histone H4 - Tetraodon nigroviridis
(Green puffer), partial (45%)
Length = 681
Score = 101 bits (51), Expect = 2e-21
Identities = 192/239 (80%)
Strand = Plus / Plus
Query: 61 aaggttctgcgcgacaacatccaaggcatcacgaagcccgcgattcggaggctggcgagg 120
|||||||| ||||||||||| || || ||||||||||| ||||||||| | |||| |
Sbjct: 153 aaggttctccgcgacaacattcagggaatcacgaagccagcgattcggcgtttggctcgc 212
Query: 121 agaggcggcgtgaagaggatcagcggtctcatctacgaggaaaccaggggagtgctcaag 180
|| || ||||||||| | ||||| || | ||||| ||||| || | || || || |||
Sbjct: 213 aggggtggcgtgaagcgtatcagtggcttgatctatgaggagactcgtggtgttctgaag 272
Query: 181 atcttcttggagaacgtgatccgtgatgcggtgacgtacacggagcacgccaggaggaag 240
||||| | ||||| ||||| |||||||| || || ||||| ||||| || |||||||||
Sbjct: 273 atctttcttgagaatgtgattcgtgatgctgttacctacactgagcatgctaggaggaag 332
Query: 241 acggtcaccgccatggatgtcgtttatgctctcaagaggcagggcaggactctctatgg 299
|| || || || |||||||| || |||||||||||||||||||| || || ||||||||
Sbjct: 333 actgttactgctatggatgttgtgtatgctctcaagaggcagggaagaaccctctatgg 391